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SCN_Rhodanobacter_65x

SCN-stock_Xanthomonadales_68_63
In projects: SCN-stock  |  SCN_92

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_Unknown

Properties

Avg. coverage: 63.32 Longest contig: 212.48 Kbp Bin length: 3.44 Mbp GC content: 67.64 %
Contigs count: 264 Features count: 3540 rRNAs count: 0 tRNAs count: 40

Genome completeness

megabin RP 50 / 55 MC: 2 BSCG 48 / 51 MC: 13 ASCG 11 / 38

Description

Full 50

Displaying items 1-50 of 264 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cnbg_combo_scaffold_7244 Rhd64_156
Order: Xanthomonadales (89.47%)
19 12397 bp 68.61 58.34 68.70
cnbg_combo_scaffold_8505 Rhd64_248b
Order: Xanthomonadales (50%)
8 7810 bp 68.13 52.78 72.14
cnbg_combo_scaffold_2020 Rhd64_123
Order: Xanthomonadales (64.71%)
17 15355 bp 67.05 64.82 74.58
cnbg_combo_scaffold_4504 Rhd64_220
Genus: Rhodanobacter (85.71%)
7 8839 bp 67.69 63.29 74.84
cnbg_combo_scaffold_1780 Rhd64_243
Order: Xanthomonadales (60%)
10 7910 bp 60.52 54.58 75.63
cnbg_combo_scaffold_6211 Rhd64_264b
Order: Xanthomonadales (87.5%)
8 7068 bp 69.98 58.49 76.49
cnbg_combo_scaffold_5767 Rhd64_323
Species: Dyella jiangningensis (50%)
4 5499 bp 68.32 63.19 76.76
cnbg_combo_scaffold_2772 Rhd64_264a
Order: Xanthomonadales (50%)
6 5389 bp 63.65 49.49 78.77
cnbg_combo_scaffold_5953 Rhd64_322
Order: Xanthomonadales (88.89%)
9 5549 bp 64.50 63.40 79.64
cnbg_combo_scaffold_2286 Rhd64_266a
Order: Xanthomonadales (66.67%)
12 9318 bp 65.95 65.97 79.68
cnbg_combo_scaffold_3848 Rhd64_257b
Order: Xanthomonadales (80%)
10 8059 bp 69.64 58.28 80.15
cnbg_combo_scaffold_3196 Rhd64_263b
Order: Xanthomonadales (50%)
6 5411 bp 67.99 65.13 80.34
cnbg_combo_scaffold_3666 Rhd64_255b
Order: Xanthomonadales (50%)
14 13121 bp 67.78 59.78 80.39
cnbg_combo_scaffold_2779 Rhd64_119
Genus: Rhodanobacter (50%)
12 16076 bp 63.80 62.03 80.93
cnbg_combo_scaffold_1667 Rhd64_128
Genus: Rhodanobacter (53.85%)
13 15093 bp 66.78 68.95 81.08
cnbg_combo_scaffold_2259 Rhd64_141
Order: Xanthomonadales (83.33%)
18 13529 bp 65.76 62.14 81.17
cnbg_combo_scaffold_1790 Rhd64_150
Order: Xanthomonadales (84.62%)
13 12968 bp 67.87 64.98 81.34
cnbg_combo_scaffold_2086 Rhd64_182
Genus: Dyella (50%)
16 11079 bp 71.48 69.68 81.59
cnbg_combo_scaffold_2799 Rhd64_194
Order: Xanthomonadales (91.67%)
12 10314 bp 68.54 67.45 81.59
cnbg_combo_scaffold_1807 Rhd64_211
Genus: Rhodanobacter (77.78%)
9 9206 bp 69.51 60.11 81.60
cnbg_combo_scaffold_3136 Rhd64_195
Order: Xanthomonadales (100%)
11 10290 bp 68.30 72.45 81.60
cnbg_combo_scaffold_5347 Rhd64_314
Order: Xanthomonadales (88.89%)
9 5712 bp 68.70 69.17 82.30
cnbg_combo_scaffold_5080 Rhd64_261b
Class: Gammaproteobacteria (60%)
5 5771 bp 69.85 66.40 82.45
cnbg_combo_scaffold_5703 Rhd64_249b
Genus: Rhodanobacter (66.67%)
9 7810 bp 66.93 59.82 82.47
cnbg_combo_scaffold_1668 Rhd64_111
Genus: Rhodanobacter (50%)
14 17171 bp 66.37 63.23 82.59
cnbg_combo_scaffold_3781 Rhd64_189
Genus: Dyella (71.43%)
14 10599 bp 66.66 55.42 82.85
cnbg_combo_scaffold_1574 Rhd64_267
Phylum: Proteobacteria (84.62%)
13 10038 bp 66.04 58.19 83.17
cnbg_combo_scaffold_2300 Rhd64_217
Order: Xanthomonadales (85.71%)
7 8876 bp 65.85 71.74 83.18
cnbg_combo_scaffold_5353 Rhd64_345
Order: Xanthomonadales (100%)
6 5029 bp 71.47 73.57 83.52
cnbg_combo_scaffold_1397 Rhd64_94
Genus: Rhodanobacter (55.56%)
18 21100 bp 67.81 61.52 83.52
cnbg_combo_scaffold_3289 Rhd64_324
Order: Xanthomonadales (100%)
7 5450 bp 68.61 71.54 83.56
cnbg_combo_scaffold_2039 Rhd64_138
Genus: Rhodanobacter (53.85%)
13 14041 bp 67.99 69.90 83.69
cnbg_combo_scaffold_4390 Rhd64_170
Order: Xanthomonadales (85.71%)
14 11760 bp 66.35 64.56 83.93
cnbg_combo_scaffold_2528 Rhd64_165
Genus: Rhodanobacter (55.56%)
9 12016 bp 67.92 60.24 83.96
cnbg_combo_scaffold_3861 Rhd64_212
Species: Rhodanobacter spathiphylli (50%)
8 9189 bp 68.16 65.42 84.26
cnbg_combo_scaffold_3301 Rhd64_171
Order: Xanthomonadales (61.54%)
13 11750 bp 65.84 57.46 84.56
cnbg_combo_scaffold_3956 Rhd64_256b
Order: Xanthomonadales (55.56%)
9 7339 bp 67.52 66.86 84.66
cnbg_combo_scaffold_2835 Rhd64_154
Genus: Rhodanobacter (52.63%)
19 12556 bp 68.21 67.23 84.72
cnbg_combo_scaffold_5678 Rhd64_161
Order: Xanthomonadales (90%)
10 12103 bp 69.77 70.76 84.75
cnbg_combo_scaffold_5821 Rhd64_275
Order: Xanthomonadales (100%)
5 6739 bp 68.62 64.61 84.80
cnbg_combo_scaffold_2131 Rhd64_265a
Species: Rhodanobacter sp. 115 (50%)
10 7053 bp 66.79 71.08 84.94
cnbg_combo_scaffold_2354 Rhd64_260a
Order: Xanthomonadales (60%)
5 6148 bp 63.87 51.35 85.00
cnbg_combo_scaffold_3566 Rhd64_136
Order: Xanthomonadales (73.33%)
15 14157 bp 69.33 63.03 85.08
cnbg_combo_scaffold_2693 Rhd64_225
Genus: Rhodanobacter (63.64%)
11 8553 bp 69.16 69.53 85.16
cnbg_combo_scaffold_4032 Rhd64_285
Genus: Rhodanobacter (57.14%)
7 6329 bp 69.65 53.23 85.23
cnbg_combo_scaffold_3554 Rhd64_326
Genus: Dyella (50%)
6 5391 bp 63.16 64.64 85.25
cnbg_combo_scaffold_2007 Rhd64_216
Genus: Rhodanobacter (62.5%)
8 8943 bp 65.57 59.41 85.27
cnbg_combo_scaffold_706 Rhd64_247a
Phylum: Proteobacteria (72%)
50 46837 bp 59.95 25.83 85.31
cnbg_combo_scaffold_876 Rhd64_248a
Order: Xanthomonadales (82.76%)
29 36945 bp 64.28 59.16 85.32
cnbg_combo_scaffold_2049 Rhd64_157
Order: Xanthomonadales (88.89%)
9 12378 bp 67.16 70.26 85.36
Displaying items 1-50 of 264 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.