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SCNpilot_expt_300_bf_scaffold_150_curated

Search features with annotation key words

Displaying items 1-30 of 251 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_150_curated_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..620
DNA (618bp) protein (206aa)
Integrase catalytic region n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6F0_ALIDK
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:AEB84259.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_150_curated_2
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

610..1413
DNA (804bp) protein (268aa)
IstB domain-containing protein ATP-binding protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2D7_9BURK
IstB domain-containing protein ATP-binding protein
IstB domain-containing protein ATP-binding protein {ECO:0000313|EMBL:AFU47137.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_expt_300_bf_scaffold_150_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1481..1786)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVA6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01751.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_150_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1774..2322)
DNA (549bp) protein (183aa)
RES domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVA7_ALIDB
RES domain-containing protein {ECO:0000313|EMBL:GAO25326.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
RES domain-containing protein
SCNpilot_expt_300_bf_scaffold_150_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2319..2690)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVA8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21134.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_150_curated_6
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3405..4190)
DNA (786bp) protein (262aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Naphthoate synthase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5V8_9RHOO
menB; naphthoate synthase
SCNpilot_expt_300_bf_scaffold_150_curated_7
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4220..5893)
DNA (1674bp) protein (558aa)
3-oxoacid (Glutaconate) CoA-transferase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5V9_9RHOO
3-oxoacid (glutaconate) CoA-transferase
3-oxoacid (Glutaconate) CoA-transferase {ECO:0000313|EMBL:BAL27372.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_300_bf_scaffold_150_curated_8
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5970..6716)
DNA (747bp) protein (249aa)
2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase n=1 Tax=Azoarcus toluclasticus RepID=UPI00036CC353
putative alcohol dehydrogenase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_300_bf_scaffold_150_curated_9
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6757..7515)
DNA (759bp) protein (253aa)
Enoyl-CoA hydratase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5W1_9RHOO
fadB; enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:BAL27374.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_300_bf_scaffold_150_curated_10
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7512..9125)
DNA (1614bp) protein (538aa)
Short-chain acyl-CoA synthetase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5W2_9RHOO
short-chain acyl-CoA synthetase
Short-chain acyl-CoA synthetase {ECO:0000313|EMBL:BAL27375.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_300_bf_scaffold_150_curated_11
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9125..9904)
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5W3_9RHOO
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_expt_300_bf_scaffold_150_curated_12
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9938..11080)
DNA (1143bp) protein (381aa)
putative acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZ73_9BURK
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCNpilot_expt_300_bf_scaffold_150_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11344..12045)
DNA (702bp) protein (234aa)
biotin/lipoate A/B protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63]
Biotin/lipoate A/B protein ligase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG6_ALIDB
Biotin/lipoate A/B protein ligase {ECO:0000313|EMBL:GAO26082.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_150_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12078..13106
DNA (1029bp) protein (343aa)
porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24]
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Delta-aminolevulinic acid dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG5_ALIDB
SCNpilot_expt_300_bf_scaffold_150_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13146..14324
DNA (1179bp) protein (393aa)
Mg2 transporter protein CorA family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG4_ALIDB
Mg2 transporter protein CorA family protein
Mg2+ transporter protein CorA family protein {ECO:0000313|EMBL:GAO26080.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_150_curated_16
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14364..15341)
DNA (978bp) protein (326aa)
Uncharacterized protein n=31 Tax=Bordetella RepID=F4L9R6_BORPC
hypothetical protein
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:AIW96689.1}; TaxID=743278 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis B1920.;"
SCNpilot_expt_300_bf_scaffold_150_curated_17
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15379..16608)
DNA (1230bp) protein (410aa)
Acetyl-CoA C-acyltransferase (EC:2.3.1.16)
Acetyl-CoA C-acyltransferase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K497_CUPNH
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KJK23459.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCNpilot_expt_300_bf_scaffold_150_curated_18
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16654..17799)
DNA (1146bp) protein (382aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UF0_CUPPJ
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:AAZ63234.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_300_bf_scaffold_150_curated_19
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17801..18823)
DNA (1023bp) protein (341aa)
Acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CAJ95179.1}; EC=2.3.1.9 {ECO:0000313|EMBL:CAJ95179.1};; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
Acetyl-CoA acetyltransferase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K495_CUPNH
SCNpilot_expt_300_bf_scaffold_150_curated_20
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18833..19966)
DNA (1134bp) protein (378aa)
acyl-CoA dehydrogenase (EC:1.3.-.-)
Acyl-CoA dehydrogenase, N-terminal domain protein 11 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HKC6_ACHXA
Acyl-CoA dehydrogenase, N-terminal domain protein {ECO:0000313|EMBL:KCV63239.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_expt_300_bf_scaffold_150_curated_21
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20070..20972
DNA (903bp) protein (301aa)
Regulatory protein, LysR:LysR, substrate-binding protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46SH9_CUPPJ
LysR family transcriptional regulator
Regulatory protein, LysR:LysR, substrate-binding protein {ECO:0000313|EMBL:AAZ63905.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCNpilot_expt_300_bf_scaffold_150_curated_22
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21013..21981)
DNA (969bp) protein (323aa)
Extra-cytoplasmic solute receptor family protein 127 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HKC8_ACHXA
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGE00384.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
extra-cytoplasmic solute receptor family protein 127
SCNpilot_expt_300_bf_scaffold_150_curated_23
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22022..22807)
DNA (786bp) protein (262aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CAJ95188.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CAJ95188.1};; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
Enoyl-CoA hydratase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K486_CUPNH
SCNpilot_expt_300_bf_scaffold_150_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22991..23503
DNA (513bp) protein (171aa)
Regulatory protein MarR n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG3_ALIDB
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:GAO26079.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_150_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23536..24957
DNA (1422bp) protein (474aa)
RND efflux system, outer membrane lipoprotein, NodT family n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG2_ALIDB
NodT family RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:GAO26078.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
NodT family RND efflux system outer membrane lipoprotein
SCNpilot_expt_300_bf_scaffold_150_curated_26
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24992..26191
DNA (1200bp) protein (400aa)
Secretion protein HlyD family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG1_ALIDB
Secretion protein HlyD family protein {ECO:0000313|EMBL:GAO26077.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
SCNpilot_expt_300_bf_scaffold_150_curated_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26194..27762
DNA (1569bp) protein (523aa)
Drug resistance transporter, EmrB/QacA subfamily n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG0_ALIDB
EmrB/QacA subfamily drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:AEB82766.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_150_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27826..28515)
DNA (690bp) protein (230aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Carboxymethylenebutenolidase {ECO:0000313|EMBL:AEB82765.1}; EC=3.1.1.45 {ECO:0000313|EMBL:AEB82765.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Carboxymethylenebutenolidase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVF9_ALIDB
SCNpilot_expt_300_bf_scaffold_150_curated_29
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28567..29313
DNA (747bp) protein (249aa)
glucose-1-dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000370FEE8
Dehydrogenase {ECO:0000313|EMBL:GAD21142.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
short-chain dehydrogenase/reductase sdr
SCNpilot_expt_300_bf_scaffold_150_curated_30
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29313..29951
DNA (639bp) protein (213aa)
Multiple antibiotic resistance (MarC)-related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVF8_ALIDB
multiple antibiotic resistance (marc)-related protein; K05595 multiple antibiotic resistance protein
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying items 1-30 of 251 in total

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