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SCNpilot_expt_300_bf_scaffold_200_curated

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_200_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..949)
DNA (948bp) protein (316aa)
YhdH/YhfP family quinone oxidoreductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036BB4DA
YhdH/YhfP family quinone oxidoreductase {ECO:0000313|EMBL:GAD22318.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
quinone oxidoreductase, yhdh/yhfp family
SCNpilot_expt_300_bf_scaffold_200_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(965..2176)
DNA (1212bp) protein (404aa)
UPI0003A59147 related cluster n=1 Tax=unknown RepID=UPI0003A59147
Formyl-CoA transferase {ECO:0000313|EMBL:GAD22317.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
l-carnitine dehydratase/bile acid-inducible protein f
SCNpilot_expt_300_bf_scaffold_200_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2398..3141
DNA (744bp) protein (248aa)
Regulatory protein IclR n=2 Tax=Alicycliphilus denitrificans RepID=E8TYN3_ALIDB
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEB86974.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3154..4308
DNA (1155bp) protein (385aa)
acyl-CoA dehydrogenase; K06446 acyl-CoA dehydrogenase [EC:1.3.99.-]
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEB86973.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEB86973.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Acyl-CoA dehydrogenase domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYN2_ALIDB
SCNpilot_expt_300_bf_scaffold_200_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4499..5470
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBQ1_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86972.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5472..6566
DNA (1095bp) protein (365aa)
2-nitropropane dioxygenase NPD n=2 Tax=Alicycliphilus denitrificans RepID=E8TYN0_ALIDB
2-nitropropane dioxygenase NPD
2-nitropropane dioxygenase NPD {ECO:0000313|EMBL:AEB86971.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6646..8199)
DNA (1554bp) protein (518aa)
Diguanylate cyclase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQS6_ALIDB
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:ADU99050.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_200_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8375..8842
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86968.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8846..10228)
DNA (1383bp) protein (461aa)
Ferric reductase domain protein transmembrane component domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM1_ALIDB
ferric reductase domain-containing protein transmembrane component domain-containing protein
Ferric reductase domain protein transmembrane component domain protein {ECO:0000313|EMBL:ADV02030.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_200_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10262..10582)
DNA (321bp) protein (107aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM0_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21106.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_200_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10714..11031
DNA (318bp) protein (106aa)
Propeptide PepSY amd peptidase M4 n=2 Tax=Alicycliphilus denitrificans RepID=E8TYL9_ALIDB
Propeptide PepSY amd peptidase M4
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:ADV02028.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_200_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11031..11702
DNA (672bp) protein (224aa)
Response regulator receiver n=2 Tax=Alicycliphilus denitrificans RepID=E8TYL8_ALIDB
response regulator receiver; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AEB86958.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11699..13063
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
ATP-binding region ATPase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYL7_ALIDB
ATP-binding region atpase domain protein
SCNpilot_expt_300_bf_scaffold_200_curated_14
unknown

Not on your lists

13127..13240
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_200_curated_15
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13252..14127
DNA (876bp) protein (292aa)
prophage antirepressor id=12550124 bin=BDI species=Cellvibrio sp. BR genus=Cellvibrio taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
prophage antirepressor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
SCNpilot_expt_300_bf_scaffold_200_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14173..14787)
DNA (615bp) protein (205aa)
Lysine exporter protein (LYSE/YGGA) n=2 Tax=Alicycliphilus denitrificans RepID=E8TYL6_ALIDB
lysine exporter protein (lyse/ygga)
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:GAO21102.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_200_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14918..15625
DNA (708bp) protein (236aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:AEB86955.1}; EC=2.5.1.9 {ECO:0000313|EMBL:AEB86955.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Riboflavin synthase, alpha subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBN4_ALIDK
SCNpilot_expt_300_bf_scaffold_200_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15872..17431
DNA (1560bp) protein (520aa)
acetate--CoA ligase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetate--CoA ligase {ECO:0000313|EMBL:AEB86954.1}; EC=6.2.1.1 {ECO:0000313|EMBL:AEB86954.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Acetate--CoA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBN3_ALIDK
SCNpilot_expt_300_bf_scaffold_200_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17474..18613
DNA (1140bp) protein (380aa)
acyl dehydratase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035FCBBF
Uncharacterized protein {ECO:0000313|EMBL:GAD22308.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_200_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18619..19812
DNA (1194bp) protein (398aa)
formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase {ECO:0000313|EMBL:AEB86952.1}; EC=2.8.3.16 {ECO:0000313|EMBL:AEB86952.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Alicycliphilus denitrificans RepID=E8TXY8_ALIDB
SCNpilot_expt_300_bf_scaffold_200_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19848..20825
DNA (978bp) protein (326aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXY7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86951.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20860..21738)
DNA (879bp) protein (293aa)
Transcriptional regulator, IclR family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBM9_ALIDK
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEB86950.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21788..22216)
DNA (429bp) protein (143aa)
Phenylacetic acid degradation-related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GBM8_ALIDK
phenylacetic acid degradation-like protein
Phenylacetic acid degradation-related protein {ECO:0000313|EMBL:AEB86949.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22473..24590)
DNA (2118bp) protein (706aa)
TonB-dependent copper receptor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXY4_ALIDB
tonb-dependent copper receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent copper receptor {ECO:0000313|EMBL:GAO25614.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_200_curated_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24700..25083)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GB09_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86947.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_26
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25195..27264)
DNA (2070bp) protein (690aa)
UPI0003D3D84F related cluster n=1 Tax=unknown RepID=UPI0003D3D84F
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:GAD22300.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ligand-gated channel protein
SCNpilot_expt_300_bf_scaffold_200_curated_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27335..27877
DNA (543bp) protein (181aa)
NUDIX hydrolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GB08_ALIDK
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AEB86946.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27904..28338)
DNA (435bp) protein (145aa)
Thioesterase superfamily protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXY1_ALIDB
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ADV02014.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_200_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28335..28547)
DNA (213bp) protein (71aa)
Biotin/lipoyl attachment domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXY0_ALIDB
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:AEB86944.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_200_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28561..29928)
DNA (1368bp) protein (456aa)
biotin carboxylase (EC:6.3.4.14); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Biotin carboxylase {ECO:0000313|EMBL:ADV02012.1}; EC=6.3.4.14 {ECO:0000313|EMBL:ADV02012.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Biotin carboxylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TXX9_ALIDB
Displaying items 1-30 of 70 in total

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