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SCNpilot_expt_300_bf_scaffold_474_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_474_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(168..2285)
DNA (2118bp) protein (706aa)
TonB-dependent receptor n=1 Tax=Comamonas testosteroni S44 RepID=D8DCB4_COMTE
TonB-dependent receptor {ECO:0000313|EMBL:KGG92059.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_300_bf_scaffold_474_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2371..3897)
DNA (1527bp) protein (509aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
Aldehyde Dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW43_ALIDB
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:GAO25412.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_474_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4202..5446)
DNA (1245bp) protein (415aa)
MscS Mechanosensitive ion channel n=2 Tax=Alicycliphilus denitrificans RepID=E8TW42_ALIDB
MscS Mechanosensitive ion channel; K16053 miniconductance mechanosensitive channel
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:GAO25411.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_474_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5603..8308
DNA (2706bp) protein (902aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW41_ALIDB
SCNpilot_expt_300_bf_scaffold_474_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8308..8820
DNA (513bp) protein (171aa)
Rare lipoprotein B n=2 Tax=Alicycliphilus denitrificans RepID=E8TW40_ALIDB
rare lipoprotein b; K03643 LPS-assembly lipoprotein
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_474_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9015..10061
DNA (1047bp) protein (349aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III, delta subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9A7_ALIDK
DNA polymerase III, delta subunit {ECO:0000313|EMBL:AEB86766.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_474_curated_7
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10080..11039)
DNA (960bp) protein (320aa)
Putative exported protein n=4 Tax=Bordetella RepID=K0MMQ6_BORPB
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:CCN21812.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_expt_300_bf_scaffold_474_curated_8
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11076..11852)
DNA (777bp) protein (259aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Probable enoyl-CoA hydratase {ECO:0000313|EMBL:CCN21811.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CCN21811.1};; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
Probable enoyl-CoA hydratase n=3 Tax=Bordetella bronchiseptica RepID=K4QLR3_BORBO
SCNpilot_expt_300_bf_scaffold_474_curated_9
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11943..12869
DNA (927bp) protein (309aa)
LysR-family transcriptional regulator n=5 Tax=Bordetella RepID=K0MHV3_BORPB
LysR family transcriptional regulator
LysR-family transcriptional regulator {ECO:0000313|EMBL:CCJ51084.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain Bpp5).;"
SCNpilot_expt_300_bf_scaffold_474_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12904..13200)
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TW38_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO25406.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_474_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13264..14544
DNA (1281bp) protein (427aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00186003};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00412}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycli
Gamma-glutamyl phosphate reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW34_ALIDB
SCNpilot_expt_300_bf_scaffold_474_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14605..16080
DNA (1476bp) protein (492aa)
TrkA-N domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW33_ALIDB
trka-n domain protein; K03499 trk system potassium uptake protein TrkA
TrkA-N domain protein {ECO:0000313|EMBL:ADV01807.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_474_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16082..17548
DNA (1467bp) protein (489aa)
Trk system potassium uptake protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW32_ALIDB
cation transporter; K03498 trk system potassium uptake protein TrkH
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_474_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17616..18911
DNA (1296bp) protein (432aa)
glutamate/cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
Glutamate/cysteine ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW31_ALIDB
Glutamate/cysteine ligase {ECO:0000313|EMBL:ADV01805.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_474_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19007..20878
DNA (1872bp) protein (624aa)
Probable potassium transport system protein kup n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW30_ALIDB
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
potassium transporter; K03549 KUP system potassium uptake protein
SCNpilot_expt_300_bf_scaffold_474_curated_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21011..22210
DNA (1200bp) protein (400aa)
Benzoate transporter n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW29_ALIDB
benzoate transporter; K05782 benzoate membrane transport protein
Benzoate transporter {ECO:0000313|EMBL:ADV01803.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_474_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22233..23189
DNA (957bp) protein (319aa)
glutathione synthetase (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3]
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Glutathione synthetase n=2 Tax=Alicycliphilus denitrificans RepID=E8TW28_ALIDB
Displaying 17 items

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