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SCNpilot_cont_1000_p_scaffold_1107_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1107_curated_1
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1..3138)
DNA (3138bp) protein (1046aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3ETK2_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE06554.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_1107_curated_2

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3473..6805
DNA (3333bp) protein (1111aa)
hypothetical protein COdytL_08996 id=4756786 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EKE08821.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1107_curated_3
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6854..7147)
DNA (294bp) protein (98aa)
Conjugal transfer protein TraD id=3886381 bin=GWC2_Alphaproteobacteria_42_16 species=Simkania negevensis genus=Simkania taxon_order=Chlamydiales taxon_class=Chlamydiia phylum=Chlamydiae tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
conjugal transfer protein TraD
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1107_curated_4

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7382..10429
DNA (3048bp) protein (1016aa)
MobA/MobL protein n=1 Tax=uncultured bacterium RepID=K2FFA3_9BACT
MobA/MobL protein {ECO:0000313|EMBL:EKE09345.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
MobA/MobL protein
SCNpilot_cont_1000_p_scaffold_1107_curated_5
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10437..11027)
DNA (591bp) protein (197aa)
id=4537003 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1107_curated_6
unknown

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comp(11273..12103)
DNA (831bp) protein (277aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1107_curated_7
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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12288..12488
DNA (201bp) protein (67aa)
Transposase n=1 Tax=Xenorhabdus nematophila F1 RepID=N1NUM3_XENNE
Transposase {ECO:0000313|EMBL:CDH44240.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1107_curated_8
Psychrobacter sp. 1501(2011), Psychrobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12567..13235
DNA (669bp) protein (223aa)
Transposase n=1 Tax=Psychrobacter sp. 1501(2011) RepID=F5SU52_9GAMM
transposase, IS4
Transposase {ECO:0000313|EMBL:EGK07276.1}; TaxID=1002339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter.;" source="Psychrobacter sp. 1501(2011).;"
SCNpilot_cont_1000_p_scaffold_1107_curated_9
unknown

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comp(13194..14975)
DNA (1782bp) protein (594aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1107_curated_10
unknown

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comp(15180..17180)
DNA (2001bp) protein (667aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1107_curated_11

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17565..20780
DNA (3216bp) protein (1072aa)
ankyrin and tpr repeat domain protein id=4649249 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EKE10469.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ankyrin and tpr repeat domain-containing protein
SCNpilot_cont_1000_p_scaffold_1107_curated_12
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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21077..21244
DNA (168bp) protein (56aa)
id=4908492 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1107_curated_13
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21386..22267)
DNA (882bp) protein (294aa)
hypothetical protein id=15194360 bin=GWC2_NOV_55_46 species=Verrucomicrobium sp. 3C genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_NOV_55_46 organism_group=Proteobacteria
Uncharacterized protein {ECO:0000313|EMBL:AIK95666.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1107_curated_14
R_WOR_2_63_39, WOR-2, Bacteria

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comp(22264..23112)
DNA (849bp) protein (283aa)
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00036B38C9
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
SCNpilot_cont_1000_p_scaffold_1107_curated_15

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comp(23196..23591)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWK8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10156.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_1107_curated_16
unknown

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comp(23706..23858)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1107_curated_17

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comp(23849..24166)
DNA (318bp) protein (106aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2FHE0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE10155.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K06919 putative DNA primase/helicase
SCNpilot_cont_1000_p_scaffold_1107_curated_18
unknown

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comp(24603..25784)
DNA (1182bp) protein (394aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1107_curated_19
Danio rerio, Danio, Cypriniformes, Neopterygii, Chordata, Metazoa

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comp(25858..28437)
DNA (2580bp) protein (860aa)
Tankyrase 1 binding protein 1 n=1 Tax=Danio rerio RepID=G1EIL6_DANRE
Tankyrase 1 binding protein 1 {ECO:0000313|EMBL:AEK26269.1}; TaxID=7955 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio.;" source="Danio rerio (Zebrafish) (Brachydanio rerio).;"
hypothetical protein
Displaying 19 items

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