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SCNpilot_cont_1000_p_scaffold_616_curated

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_616_curated_1
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(129..629)
DNA (501bp) protein (167aa)
Acetyltransferase, GNAT family n=1 Tax=Pseudomonas chlororaphis subsp. aureofaciens 30-84 RepID=J2N4R3_9PSED
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EJL08797.1}; TaxID=1038921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis subsp. aureofaciens 30-84.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_616_curated_2
unknown

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comp(608..916)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_616_curated_3
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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1070..2335
DNA (1266bp) protein (422aa)
Helicase family protein,DEAD/DEAH box helicase id=3232882 bin=GWC2_Alphaproteobacteria_42_16 species=alpha proteobacterium HIMB5 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Cold-shock DEAD-box protein A
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_4
unknown

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2695..3108
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_616_curated_5

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comp(3121..5148)
DNA (2028bp) protein (676aa)
oligopeptide transporter, OPT family protein id=3232886 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Uncharacterized protein {ECO:0000313|EMBL:EKE09458.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
oligopeptide transporter
SCNpilot_cont_1000_p_scaffold_616_curated_6

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comp(5295..5774)
DNA (480bp) protein (160aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=1 Tax=uncultured bacterium RepID=K2EUS5_9BACT
SCNpilot_cont_1000_p_scaffold_616_curated_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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5845..6078
DNA (234bp) protein (78aa)
Putative uncharacterized protein id=3232895 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_8
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6091..8409)
DNA (2319bp) protein (773aa)
Organic solvent tolerance protein OstA id=3959752 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
ostA; organic solvent tolerance protein OstA; K04744 LPS-assembly protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_9
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8411..9502)
DNA (1092bp) protein (364aa)
Permease YjgP/YjgQ family protein id=3959753 bin=GWC2_Alphaproteobacteria_42_16 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
permease YjgP; K11720 lipopolysaccharide export system permease protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_10
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9499..10611)
DNA (1113bp) protein (371aa)
Predicted permease id=3959754 bin=GWC2_Alphaproteobacteria_42_16 species=Phaeospirillum molischianum genus=Phaeospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
conserved membrane protein of unknown function
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_11

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11219..12523
DNA (1305bp) protein (435aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
parvulin-like peptidyl-prolyl isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
Parvulin-like protein peptidyl-prolyl isomerase n=1 Tax=uncultured bacterium RepID=K2ELT1_9BACT
SCNpilot_cont_1000_p_scaffold_616_curated_12
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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12616..13443
DNA (828bp) protein (276aa)
ksgA; dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Dimethyladenosine transferase id=3959756 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_13
unknown

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comp(13487..13765)
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_616_curated_14
Criblamydia sequanensis, Criblamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(13942..15420)
DNA (1479bp) protein (493aa)
Putative lignostilbene-alpha,beta-dioxygenase {ECO:0000313|EMBL:CDR34559.1}; EC=1.13.11.43 {ECO:0000313|EMBL:CDR34559.1};; TaxID=340071 species="Bacteria; Chlamydiae; Chlamydiales; Criblamydiaceae; Criblamydia.;" source="Criblamydia sequanensis.;"
Putative dioxygenase n=1 Tax=Simkania negevensis (strain ATCC VR-1471 / Z) RepID=F8L5P4_SIMNZ
putative dioxygenase
SCNpilot_cont_1000_p_scaffold_616_curated_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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15521..16066
DNA (546bp) protein (182aa)
Uncharacterized protein id=4908644 bin=GWC2_Alphaproteobacteria_42_16 species=Phyllobacterium sp. YR531 genus=Phyllobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein; K09005 hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_16
unknown

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16526..17650
DNA (1125bp) protein (375aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_616_curated_17
unknown

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17672..17995
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_616_curated_18
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18538..19485
DNA (948bp) protein (316aa)
fabD; ACP S-malonyltransferase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
Malonyl CoA-acyl carrier protein transacylase id=3924192 bin=GWC2_Alphaproteobacteria_42_16 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_19

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19495..20232
DNA (738bp) protein (246aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EFY5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE09008.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_616_curated_20
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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20351..20590
DNA (240bp) protein (80aa)
Acyl carrier protein id=3924190 bin=GWC2_Alphaproteobacteria_42_16 species=SAR116 cluster alpha proteobacterium HIMB100 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
acpP2; acyl carrier protein (ACP)
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_21

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20610..21869
DNA (1260bp) protein (420aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=uncultured bacterium RepID=K2DSW7_9BACT
fabF2; 3-oxoacyl-[acyl-carrier-protein] synthase II
SCNpilot_cont_1000_p_scaffold_616_curated_22
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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21959..22939
DNA (981bp) protein (327aa)
Aminodeoxychorismate lyase id=3924188 bin=GWC2_Alphaproteobacteria_42_16 species=Azospirillum sp. genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
aminodeoxychorismate lyase; K07082 UPF0755 protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_23

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23057..24085
DNA (1029bp) protein (343aa)
Protein RecA id=3443372 bin=GWC2_Alphaproteobacteria_42_16 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
recA; recombinase A; K03553 recombination protein RecA
SCNpilot_cont_1000_p_scaffold_616_curated_24
Helicobacter sanguini, Helicobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

24216..24401
DNA (186bp) protein (62aa)
Uncharacterized protein {ECO:0000313|EMBL:KGI51946.1}; TaxID=1548018 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter.;" source="Helicobacter sanguini.;"
Endo/excinuclease amino terminal domain protein id=2604117 bin=GWC1_CPR2_39_9 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
endonuclease; K07461 putative endonuclease
SCNpilot_cont_1000_p_scaffold_616_curated_25

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24619..27255
DNA (2637bp) protein (879aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase id=3443366 bin=GWC2_Alphaproteobacteria_42_16 species=Rhizobium tropici genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
SCNpilot_cont_1000_p_scaffold_616_curated_26
unknown

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comp(27429..28070)
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_616_curated_27

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comp(28177..29322)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EJ57_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE09522.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
DegT/DnrJ/EryC1/StrS family protein
SCNpilot_cont_1000_p_scaffold_616_curated_28

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comp(29322..30314)
DNA (993bp) protein (331aa)
NAD-dependent oxidoreductase (EC:2.3.1.-)
Hexapeptide repeat-containing oxidoreductase n=1 Tax=uncultured bacterium RepID=K2DUN6_9BACT
Hexapeptide repeat-containing oxidoreductase {ECO:0000313|EMBL:EKE09521.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_616_curated_29
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(30541..31071)
DNA (531bp) protein (177aa)
Putative uncharacterized protein id=4756867 bin=GWC2_Alphaproteobacteria_42_16 species=Orientia tsutsugamushi genus=Orientia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_616_curated_30
unknown

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comp(31077..31544)
DNA (468bp) protein (156aa)

This feature has no annotations

Displaying items 1-30 of 53 in total

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