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SCNpilot_cont_1000_p_scaffold_1423_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1423_curated_1
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..730)
DNA (729bp) protein (243aa)
major facilitator superfamily transporter id=2532070 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Odyssella thessalonicensis genus=Candidatus Odyssella taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
major facilitator family transporter; K03762 MFS transporter, MHS family, proline/betaine transporter
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_1423_curated_2
Polysphondylium pallidum, Polysphondylium, Dictyosteliida, Eukaryota

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comp(832..2013)
DNA (1182bp) protein (394aa)
Hydroxyacid oxidase n=1 Tax=Polysphondylium pallidum RepID=D3BRV9_POLPA
Hydroxyacid oxidase {ECO:0000313|EMBL:EFA76141.1}; TaxID=13642 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Polysphondylium.;" source="Polysphondylium pallidum (Cellular slime mold).;"
alpha-hydroxyacid dehydrogenase
SCNpilot_cont_1000_p_scaffold_1423_curated_3
Candidatus Paracaedibacter acanthamoebae, Candidatus Paracaedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1958..3742)
DNA (1785bp) protein (595aa)
xenobiotic-transporting ATPase (EC:3.6.3.44); K06147 ATP-binding cassette, subfamily B, bacterial
Uncharacterized protein {ECO:0000313|EMBL:AIK96266.1}; TaxID=91604 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Candidatus Paracaedibacter.;" source="Candidatus Paracaedibacter acanthamoebae.;"
Multidrug resistance protein Atm1 id=4064194 bin=GWA2_TM6_36_9 species=GWA2_TM6_36_9 genus=GWA2_TM6_36_9 taxon_order=GWA2_TM6_36_9 taxon_class=GWA2_TM6_36_9 phylum=TM6 tax=GWA2_TM6_36_9 organism_group=TM6
SCNpilot_cont_1000_p_scaffold_1423_curated_4
Lyngbya aestuarii, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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3959..4708
DNA (750bp) protein (250aa)
Linear gramicidin dehydrogenase LgrE {ECO:0000313|EMBL:ERT06762.1}; EC=1.1.-.- {ECO:0000313|EMBL:ERT06762.1};; TaxID=1348334 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya aestuarii BL J.;"
oleoyl-(acyl-carrier-protein) hydrolase; K01071 oleoyl-[acyl-carrier-protein] hydrolase [EC:3.1.2.14]
hypothetical protein n=1 Tax=Microchaete sp. PCC 7126 RepID=UPI00034A8446
SCNpilot_cont_1000_p_scaffold_1423_curated_5
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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5178..6263
DNA (1086bp) protein (362aa)
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:ABX04531.1}; EC=1.13.11.27 {ECO:0000313|EMBL:ABX04531.1};; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUK4_HERA2
4-hydroxyphenylpyruvate dioxygenase
SCNpilot_cont_1000_p_scaffold_1423_curated_6
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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6256..7428
DNA (1173bp) protein (391aa)
Putative transcriptional regulator, GntR family n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AUK3_HERA2
GntR family transcriptional regulator
Putative transcriptional regulator, GntR family {ECO:0000313|EMBL:ABX04530.1}; TaxID=316274 species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
SCNpilot_cont_1000_p_scaffold_1423_curated_7
unknown

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comp(7492..9213)
DNA (1722bp) protein (574aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1423_curated_8

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comp(9299..10432)
DNA (1134bp) protein (378aa)
Transposase, is4 family n=1 Tax=uncultured bacterium RepID=K2DTT4_9BACT
Transposase, is4 family {ECO:0000313|EMBL:EKE09266.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase IS4 family protein
SCNpilot_cont_1000_p_scaffold_1423_curated_9
Candidatus Caedibacter acanthamoebae, Caedibacter, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10599..11297)
DNA (699bp) protein (233aa)
Transposase IS4 family protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BYA3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIL13892.1}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;"
transposase IS4 family protein
SCNpilot_cont_1000_p_scaffold_1423_curated_10
unknown

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comp(11339..11467)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1423_curated_11
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11843..13423)
DNA (1581bp) protein (527aa)
Asparagine synthetase {ECO:0000313|EMBL:CDH20375.1}; EC=6.3.5.4 {ECO:0000313|EMBL:CDH20375.1};; TaxID=1398203 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. kraussei Quebec.;"
asparagine synthetase; K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
Asparagine synthetase n=11 Tax=Erwinia amylovora RepID=D4I1Z7_ERWAC
SCNpilot_cont_1000_p_scaffold_1423_curated_12
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

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comp(13444..14307)
DNA (864bp) protein (288aa)
aspartate racemase; K01779 aspartate racemase [EC:5.1.1.13]
Aspartate racemase n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A6U3_NATTJ
Aspartate racemase {ECO:0000313|EMBL:ACB84224.1}; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
SCNpilot_cont_1000_p_scaffold_1423_curated_13
unknown

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14535..14870
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1423_curated_14
CG_Cyano_01, Cyanobacteria, Bacteria

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15178..15936
DNA (759bp) protein (253aa)
4'-phosphopantetheinyl transferase; K06133 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
4'-phosphopantetheinyl transferase n=2 Tax=Cyanothece RepID=B1WSA9_CYAA5
Tax=CG_Cyano_01
SCNpilot_cont_1000_p_scaffold_1423_curated_15
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15933..16253)
DNA (321bp) protein (107aa)
Transposase family protein n=1 Tax=Acidithiobacillus caldus (strain SM-1) RepID=F9ZUM6_ACICS
transposase family protein
Transposase family protein {ECO:0000313|EMBL:AEK59592.1}; TaxID=990288 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus (strain SM-1).;"
SCNpilot_cont_1000_p_scaffold_1423_curated_16
CG_Verruco_01, Verrucomicrobia, Bacteria

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comp(16324..18114)
DNA (1791bp) protein (597aa)
Multidrug resistance protein Atm1 id=4064194 bin=GWA2_TM6_36_9 species=GWA2_TM6_36_9 genus=GWA2_TM6_36_9 taxon_order=GWA2_TM6_36_9 taxon_class=GWA2_TM6_36_9 phylum=TM6 tax=GWA2_TM6_36_9 organism_group=TM6
atm1; multidrug resistance protein Atm1; K06147 ATP-binding cassette, subfamily B, bacterial
Tax=CG_Verruco_01
SCNpilot_cont_1000_p_scaffold_1423_curated_17
Legionella oakridgensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18502..19851)
DNA (1350bp) protein (450aa)
2-polyprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:ETO92076.1}; EC=1.14.13.9 {ECO:0000313|EMBL:ETO92076.1};; TaxID=1274403 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella oakridgensis RV-2-2007.;"
Kynurenine 3-monooxygenase n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4ANA0_FLELS
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase
SCNpilot_cont_1000_p_scaffold_1423_curated_18
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(19950..20612)
DNA (663bp) protein (221aa)
UbiE/COQ5 methyltransferase n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YTX9_LYNSP
UbiE/COQ5 methyltransferase {ECO:0000313|EMBL:EAW35466.1}; TaxID=313612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).;"
Methyltransferase type 11
SCNpilot_cont_1000_p_scaffold_1423_curated_19
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20766..20996)
DNA (231bp) protein (77aa)
MbtH-like protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRH8_9GAMM
MbtH-like protein {ECO:0000313|EMBL:EAR21800.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
MbtH-like protein
SCNpilot_cont_1000_p_scaffold_1423_curated_20
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21047..21367)
DNA (321bp) protein (107aa)
MbtH domain protein n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3J036_9GAMM
MbtH domain-containing protein
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
SCNpilot_cont_1000_p_scaffold_1423_curated_21
Orientia tsutsugamushi, Orientia, Rickettsiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22400..22582
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Rickettsiaceae bacterium Os18 RepID=UPI00036EB23C
Conserved hypothetical integral membrane family protein {ECO:0000313|EMBL:KJV75641.1}; TaxID=1359176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Orientia.;" source="Orientia tsutsugamushi str. TA763.;"
hypothetical protein; K09125 hypothetical protein
Displaying 21 items

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