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SCNpilot_cont_1000_p_scaffold_841_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_841_curated_1
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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200..433
DNA (234bp) protein (78aa)
Putative uncharacterized protein id=4531687 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_2
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

434..2983
DNA (2550bp) protein (850aa)
Putative uncharacterized protein id=4531688 bin=GWC2_Alphaproteobacteria_42_16 species=ACD17 genus=ACD17 taxon_order=ACD17 taxon_class=ACD17 phylum=Clamydiae tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein; K06919 putative DNA primase/helicase
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_3
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2976..3443
DNA (468bp) protein (156aa)
id=3549334 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_4
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3509..4897
DNA (1389bp) protein (463aa)
Putative transcriptional regulator with HTH domain n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9P7H3_CYAGP
transcriptional regulator with HTH domain
Tax=RBG_16_Gammaproteobacteria_51_14_curated
SCNpilot_cont_1000_p_scaffold_841_curated_5
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5078..7279
DNA (2202bp) protein (734aa)
Conjugal transfer relaxase TraA (Fragment) n=1 Tax=uncultured bacterium RepID=K2EU72_9BACT
conjugal transfer relaxase TraA
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_6
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7328..7630)
DNA (303bp) protein (101aa)
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7760..7936)
DNA (177bp) protein (59aa)
id=3895500 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_8
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

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8186..9388
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2E7B0_TRIVA
hypothetical protein; K14836 nucleolar protein 8
Putative uncharacterized protein {ECO:0000313|EMBL:EAY11507.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
SCNpilot_cont_1000_p_scaffold_841_curated_9
Lysinibacillus varians, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9541..10095
DNA (555bp) protein (185aa)
Suppressor of lin-12 (Sel-1L) {ECO:0000313|EMBL:AHN20146.1}; TaxID=1145276 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus varians.;"
SCNpilot_cont_1000_p_scaffold_841_curated_10
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10367..10978)
DNA (612bp) protein (204aa)
id=4199847 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_11
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11072..14467)
DNA (3396bp) protein (1132aa)
Tetratricopeptide repeat protein n=1 Tax=uncultured bacterium RepID=K2EY05_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_12
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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14827..19335
DNA (4509bp) protein (1503aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU29_AMOA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE06731.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiaticus (strain 5a2).;"
SCNpilot_cont_1000_p_scaffold_841_curated_13
unknown

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20055..21794
DNA (1740bp) protein (580aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_841_curated_14
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21968..22165
DNA (198bp) protein (66aa)
Preprotein translocase subunit SecE id=4429549 bin=GWC2_Alphaproteobacteria_42_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
preprotein translocase subunit SecE
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_15

Not on your lists

22173..22709
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=1 Tax=uncultured bacterium RepID=K2DX93_9BACT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
nusG; transcription antitermination factor NusG; K02601 transcriptional antiterminator NusG
SCNpilot_cont_1000_p_scaffold_841_curated_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22868..23296
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=uncultured bacterium RepID=K2ELR4_9BACT
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_17
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23301..23990
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=uncultured bacterium RepID=K2EJU3_9BACT
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_18

Not on your lists


24117..24839
DNA (723bp) protein (241aa)
50S ribosomal protein L10 id=4429541 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
SCNpilot_cont_1000_p_scaffold_841_curated_19

Not on your lists


24870..25250
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=uncultured bacterium RepID=K2FI40_9BACT
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_cont_1000_p_scaffold_841_curated_20
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25403..29575
DNA (4173bp) protein (1391aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta id=4429538 bin=GWC2_Alphaproteobacteria_42_16 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_21
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29680..33885
DNA (4206bp) protein (1402aa)
DNA-directed RNA polymerase subunit beta' n=1 Tax=uncultured bacterium RepID=K2DX89_9BACT
rpoC; RNA polymerase, beta prime subunit
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_22
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


34259..34630
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=uncultured bacterium RepID=K2ELP9_9BACT
rpsL; putative 30S ribosomal protein S12
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_23
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


34643..35113
DNA (471bp) protein (157aa)
30S ribosomal protein S7 id=4429496 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Puniceispirillum marinum genus=Candidatus Puniceispirillum taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
SCNpilot_cont_1000_p_scaffold_841_curated_24

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35129..37204
DNA (2076bp) protein (692aa)
Elongation factor G n=1 Tax=uncultured bacterium RepID=K2EY27_9BACT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
elongation factor G; K02355 elongation factor G
SCNpilot_cont_1000_p_scaffold_841_curated_25
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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37220..38404
DNA (1185bp) protein (395aa)
Elongation factor Tu n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AEN2_AZOBR
tufB2; elongation factor Tu (EF-Tu)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Displaying 25 items

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