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scnpilot_expt_750_p_scaffold_2815_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_expt_750_p_scaffold_2815_curated_1
unknown

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2..265
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_expt_750_p_scaffold_2815_curated_2
Porphyromonas gingivalis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(351..995)
DNA (645bp) protein (215aa)
oxidoreductase short chain dehydrogenase/reductase family; K00540 [EC:1.-.-.-]
UPI0003D1A27F related cluster n=1 Tax=unknown RepID=UPI0003D1A27F
Short-chain dehydrogenase {ECO:0000313|EMBL:ETA27457.1}; TaxID=1211023 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas gingivalis SJD2.;"
scnpilot_expt_750_p_scaffold_2815_curated_3
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1017..1763)
DNA (747bp) protein (249aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000256|RuleBase:RU361267}; EC=2.3.1.51 {ECO:0000256|RuleBase:RU361267};; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
Acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J1I9_9PORP
scnpilot_expt_750_p_scaffold_2815_curated_4
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1914..2915)
DNA (1002bp) protein (334aa)
Glycosyl transferase family 2 n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RXZ4_LEAB4
Glycosyl transferase family 2 {ECO:0000313|EMBL:KIA84044.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
family 2 glycosyl transferase
scnpilot_expt_750_p_scaffold_2815_curated_5
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(2966..3910)
DNA (945bp) protein (315aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WVM7_9PORP
NAD-dependent dehydratase {ECO:0000313|EMBL:KIA85282.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
scnpilot_expt_750_p_scaffold_2815_curated_6
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(4035..4976)
DNA (942bp) protein (314aa)
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) (EC:3.2.1.-)
Soluble lytic murein transglycosylase-like protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CBN3_9FLAO
Lytic murein transglycosylase {ECO:0000313|EMBL:KIC64775.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
scnpilot_expt_750_p_scaffold_2815_curated_7
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5204..6439
DNA (1236bp) protein (412aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WYK9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04341.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
zinc protease YmxG
scnpilot_expt_750_p_scaffold_2815_curated_8
Parabacteroides goldsteinii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6480..7112
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=N2BB38_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EOS13261.1}; TaxID=1235789 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides goldsteinii dnLKV18.;"
hypothetical protein
scnpilot_expt_750_p_scaffold_2815_curated_9
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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7281..8189
DNA (909bp) protein (303aa)
DNA adenine methylase id=1729302 bin=GWB2_Ignavibacteria_35_12 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
DNA adenine methylase
Tax=GWA2_Bacteroidetes_31_9_curated
scnpilot_expt_750_p_scaffold_2815_curated_10
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

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8186..8587
DNA (402bp) protein (134aa)
SphI restriction endonuclease id=5000431 bin=GWA2_Ignavibacteria-rel_35_8 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
HNH nuclease
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
scnpilot_expt_750_p_scaffold_2815_curated_11
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9104..9766)
DNA (663bp) protein (221aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27]
uracil-DNA glycosylase n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F23C5
scnpilot_expt_750_p_scaffold_2815_curated_12
Bacteroides intestinalis CAG:564, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9841..10221)
DNA (381bp) protein (127aa)
prolyl oligopeptidase (EC:3.4.21.26); K01322 prolyl oligopeptidase [EC:3.4.21.26]
Peptidase, S9A/B/C family, catalytic domain protein n=2 Tax=Bacteroides RepID=B3CIY1_9BACE
Peptidase S9A/B/C family catalytic domain protein {ECO:0000313|EMBL:CCY87345.1}; TaxID=1263049 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides intestinalis CAG:564.;"
Displaying 12 items

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