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SCNpilot_cont_300_bf_scaffold_5809_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5809_curated_1
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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617..835
DNA (219bp) protein (73aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
two component system sensor protein; K07649 two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3]
Sensor protein qseC n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2K4_BREDI
SCNpilot_cont_300_bf_scaffold_5809_curated_2
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(844..1986)
DNA (1143bp) protein (381aa)
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2K5_BREDI
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
SCNpilot_cont_300_bf_scaffold_5809_curated_3
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2052..3101
DNA (1050bp) protein (350aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
tRNA-dihydrouridine synthase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2K6_BREDI
hypothetical protein
SCNpilot_cont_300_bf_scaffold_5809_curated_4
unknown

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comp(4030..4368)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5809_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4600..5274
DNA (675bp) protein (225aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
multi-sensor signal transduction histidine kinase; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
Nitrogen regulation protein ntrY n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2K7_BREDI
SCNpilot_cont_300_bf_scaffold_5809_curated_6
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5285..6691
DNA (1407bp) protein (469aa)
Nitrogen assimilation regulatory protein ntrX n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2K8_BREDI
Nitrogen assimilation regulatory protein ntrX {ECO:0000313|EMBL:EGF94453.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
SCNpilot_cont_300_bf_scaffold_5809_curated_7
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6691..7551
DNA (861bp) protein (287aa)
D-alanine aminotransferase {ECO:0000313|EMBL:EGF94454.1}; EC=2.6.1.21 {ECO:0000313|EMBL:EGF94454.1};; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
class IV aminotransferase; K00824 D-alanine transaminase [EC:2.6.1.21]
D-alanine aminotransferase n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2K9_BREDI
SCNpilot_cont_300_bf_scaffold_5809_curated_8
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7663..7908
DNA (246bp) protein (82aa)
RNA-binding protein Hfq n=2 Tax=Brevundimonas diminuta RepID=L1Q9D6_BREDI
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
RNA chaperone Hfq; K03666 host factor-I protein
SCNpilot_cont_300_bf_scaffold_5809_curated_9
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7909..9192
DNA (1284bp) protein (428aa)
GTPase HflX n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q8D9_BREDI
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
GTP-binding proten HflX; K03665 GTP-binding protein HflX
SCNpilot_cont_300_bf_scaffold_5809_curated_10
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9200..9883
DNA (684bp) protein (228aa)
Na+/H+ antiporter n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2L1_BREDI
Na+/H+ antiporter {ECO:0000313|EMBL:EGF94456.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
Displaying 10 items

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