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SCNpilot_bf_inoc_scaffold_655_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_655_curated_1
unknown

Not on your lists

comp(1..153)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_655_curated_2
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150..296)
DNA (147bp) protein (49aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:ADX44626.1}; EC=6.2.1.3 {ECO:0000313|EMBL:ADX44626.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
Long-chain-fatty-acid--CoA ligase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7U2_ACIAP
SCNpilot_bf_inoc_scaffold_655_curated_3
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2190..2897
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDN5_9BURK
Crp/Fnr family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_bf_inoc_scaffold_655_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2968..3792
DNA (825bp) protein (275aa)
pseudouridine synthase Rsu; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
RNA-binding S4 domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX53_ALIDB
Pseudouridine synthase Rsu {ECO:0000313|EMBL:AEB82926.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_bf_inoc_scaffold_655_curated_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3901..5862
DNA (1962bp) protein (654aa)
Chaperone protein HtpG n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TV41_ACIAC
heat shock protein 90; K04079 molecular chaperone HtpG
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_bf_inoc_scaffold_655_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6169..7374
DNA (1206bp) protein (402aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EIK92881.1}; EC=2.3.1.16 {ECO:0000313|EMBL:EIK92881.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUJ1_9BURK
SCNpilot_bf_inoc_scaffold_655_curated_7
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7516..9675
DNA (2160bp) protein (720aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HUI2_9BURK
3-hydroxyacyl-CoA dehydrogenase
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AFU44397.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCNpilot_bf_inoc_scaffold_655_curated_8
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9834..11786
DNA (1953bp) protein (651aa)
Glutamate synthase family protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KSK5_9BURK
Glutamate synthase family protein {ECO:0000313|EMBL:EJE54118.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ferredoxin-dependent glutamate synthase
SCNpilot_bf_inoc_scaffold_655_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11850..13058)
DNA (1209bp) protein (403aa)
hypothetical protein; K02004 putative ABC transport system permease protein id=12495451 bin=THIO_HI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_655_curated_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13058..13789)
DNA (732bp) protein (244aa)
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein id=12495450 bin=THIO_HI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ABC transporter related protein {ECO:0000313|EMBL:EER58736.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
ABC transporter; K02003 putative ABC transport system ATP-binding protein
SCNpilot_bf_inoc_scaffold_655_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13786..15135)
DNA (1350bp) protein (450aa)
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein id=12495449 bin=THIO_HI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_655_curated_12
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15135..16547)
DNA (1413bp) protein (471aa)
NodT family RND efflux system, outer membrane lipoprotein id=12495448 bin=THIO_HI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RND efflux system outer membrane lipoprotein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_655_curated_13
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16870..17715
DNA (846bp) protein (282aa)
arsRC; bifunctional AsrR family transcriptional regulator/arsenate reductase/phosphotyrosine protein phosphatase (EC:1.20.4.1 3.1.3.48)
Bifunctional protein, N-terminal transcriptional regulator, ArsR family and C-terminal arsenate reductase/phosphotyrosine protein phosphatase {ECO:0000313|EMBL:CAX22987.1}; EC=1.20.4.1 {ECO:0000313|EMBL:CAX22987.1};; EC=3.1.3.48 {ECO:0000313|EMBL:CAX22987.1};; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
Bifunctional protein, N-terminal transcriptional regulator, ArsR family and C-terminal arsenate reductase/phosphotyrosine protein phosphatase n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CFR1_METED
SCNpilot_bf_inoc_scaffold_655_curated_14
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17845..18159
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y7W6_9RHOO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
SCNpilot_bf_inoc_scaffold_655_curated_15
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18189..18548
DNA (360bp) protein (120aa)
Arsenic resistance operon trans-acting repressor ArsD n=3 Tax=Proteobacteria RepID=L2EKR9_9BURK
Arsenic resistance operon trans-acting repressor ArsD {ECO:0000313|EMBL:ELA00210.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
arsenic resistance operon trans-acting repressor ArsD
SCNpilot_bf_inoc_scaffold_655_curated_16
Pseudomonas plecoglossicida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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18563..20329
DNA (1767bp) protein (589aa)
arsenite-activated ATPase ArsA (EC:3.6.3.16); K01551 arsenite-transporting ATPase [EC:3.6.3.16]
Arsenite-activated ATPase ArsA n=2 Tax=Proteobacteria RepID=L2EMP7_9BURK
Arsenical pump-driving ATPase {ECO:0000313|EMBL:AJG14462.1}; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
SCNpilot_bf_inoc_scaffold_655_curated_17
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20326..21369
DNA (1044bp) protein (348aa)
arsenic transporter n=1 Tax=Paracoccus sp. TRP RepID=UPI000225FBD0
arsB; arsenite export protein; K03325 arsenite transporter, ACR3 family
Tax=BJP_IG2158_Rhodobacterales_64_37
SCNpilot_bf_inoc_scaffold_655_curated_18
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21399..22892)
DNA (1494bp) protein (498aa)
AMP nucleosidase (EC:3.2.2.4); K01241 AMP nucleosidase [EC:3.2.2.4]
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
AMP nucleosidase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FU1_POLSJ
SCNpilot_bf_inoc_scaffold_655_curated_19
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23065..24138
DNA (1074bp) protein (358aa)
gentisate 1,2-dioxygenase; K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4]
Gentisate 1,2-dioxygenase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZMH6_9PROT
Gentisate 1,2-dioxygenase {ECO:0000313|EMBL:EME68492.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
SCNpilot_bf_inoc_scaffold_655_curated_20
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24193..24891
DNA (699bp) protein (233aa)
Fumarylpyruvate hydrolase {ECO:0000313|EMBL:CBS89766.1}; EC=3.7.1.5 {ECO:0000313|EMBL:CBS89766.1};; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
Fumarylpyruvate hydrolase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZCZ8_AZOL4
nagK; fumarylpyruvate hydrolase
SCNpilot_bf_inoc_scaffold_655_curated_21
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24968..26191
DNA (1224bp) protein (408aa)
Salicylate hydroxylase {ECO:0000313|EMBL:KJK20962.1}; EC=1.14.13.1 {ECO:0000313|EMBL:KJK20962.1};; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
fad dependent oxidoreductase; K00480 salicylate hydroxylase [EC:1.14.13.1]
Salicylate hydroxylase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HZS9_9BURK
SCNpilot_bf_inoc_scaffold_655_curated_22
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26279..27139
DNA (861bp) protein (287aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS07_9BURK
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_bf_inoc_scaffold_655_curated_23
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27154..28065)
DNA (912bp) protein (304aa)
sugar kinase, ribokinase family; K00856 adenosine kinase [EC:2.7.1.20]
Sugar kinase, ribokinase family-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZQ7_RAMTT
Sugar kinase, ribokinase family-like protein {ECO:0000313|EMBL:AEG92086.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_655_curated_24
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28125..29135)
DNA (1011bp) protein (337aa)
Zinc finger/thioredoxin putative n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHZ5_VEREI
zinc finger/thioredoxin putative
Zinc finger/thioredoxin putative {ECO:0000313|EMBL:ABM57252.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_bf_inoc_scaffold_655_curated_25
unknown

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29467..29610
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_655_curated_26
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29631..30515)
DNA (885bp) protein (295aa)
50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Ribosomal protein L11 methyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZQ5_RAMTT
SCNpilot_bf_inoc_scaffold_655_curated_27
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30762..32111)
DNA (1350bp) protein (450aa)
acetyl-CoA carboxylase, biotin carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] id=12550592 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
acetyl-CoA carboxylase, biotin carboxylase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_655_curated_28
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32238..32696)
DNA (459bp) protein (153aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR33_ALIDB
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KGH26427.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_bf_inoc_scaffold_655_curated_29
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32990..33562)
DNA (573bp) protein (191aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=2 Tax=Alicycliphilus denitrificans RepID=E8TR34_ALIDB
Redoxin domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCNpilot_bf_inoc_scaffold_655_curated_30
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33559..34164)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XZQ1_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG92080.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
Displaying items 1-30 of 32 in total

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