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SCNpilot_bf_inoc_scaffold_1881_curated

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Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_1881_curated_1
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72..272
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000369D357
Phage-related protein {ECO:0000313|EMBL:BAO83139.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1881_curated_2
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

269..547
DNA (279bp) protein (93aa)
Transcriptional regulator, XRE family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZW7_THIK1
XRE family transcriptional regulator
Tax=CG_Rhodof_04
SCNpilot_bf_inoc_scaffold_1881_curated_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

706..1098
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DLB9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KGH07038.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_bf_inoc_scaffold_1881_curated_4
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1198..1983)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WD47_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EKF74683.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengensis A-11-3.;"
SCNpilot_bf_inoc_scaffold_1881_curated_5
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2625..3095)
DNA (471bp) protein (157aa)
Transcriptional regulator, MerR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12BQ6_POLSJ
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABE44036.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_bf_inoc_scaffold_1881_curated_6
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3217..3591)
DNA (375bp) protein (125aa)
Integration host factor subunit alpha n=1 Tax=Acidovorax sp. CF316 RepID=J0U3T6_9BURK
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
SCNpilot_bf_inoc_scaffold_1881_curated_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3615..6050)
DNA (2436bp) protein (812aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Polaromonas sp. CF318 RepID=J2LBK1_9BURK
SCNpilot_bf_inoc_scaffold_1881_curated_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6063..7130)
DNA (1068bp) protein (356aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVV8_RAMTT
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1881_curated_9
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7250..7606)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVV7_RAMTT
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_bf_inoc_scaffold_1881_curated_10
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7633..7836)
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNX5_9BURK
ribosomal protein l35; K02916 large subunit ribosomal protein L35
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_bf_inoc_scaffold_1881_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7987..8523)
DNA (537bp) protein (179aa)
Translation initiation factor IF-3 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3R0_ACIDE
translation initiation factor if-3; K02520 translation initiation factor IF-3
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1881_curated_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8676..10028)
DNA (1353bp) protein (451aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
threonyl-tRNA synthetase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036295B6
threonyl-tRNA synthetase-like
SCNpilot_bf_inoc_scaffold_1881_curated_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10948..11319
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5U2_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG29995.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
SCNpilot_bf_inoc_scaffold_1881_curated_14
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11393..11707)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C227_DESTA
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
SCNpilot_bf_inoc_scaffold_1881_curated_15
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11858..13186)
DNA (1329bp) protein (443aa)
isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1]
isocitrate lyase n=1 Tax=Curvibacter lanceolatus RepID=UPI000378B6CF
Isocitrate lyase {ECO:0000313|EMBL:EER60876.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
SCNpilot_bf_inoc_scaffold_1881_curated_16
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13602..14564
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3Q6_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER60874.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1881_curated_17
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14709..15209)
DNA (501bp) protein (167aa)
ribonuclease n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B09DE
ribonuclease activity regulator protein rraa; K02553 regulator of ribonuclease activity A
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1881_curated_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15516..15869
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG80_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK88220.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_1881_curated_19
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15989..17677)
DNA (1689bp) protein (563aa)
Fis family transcriptional regulator; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
thiamine pyrophosphate protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI000304CBCE
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
SCNpilot_bf_inoc_scaffold_1881_curated_20
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17697..18929)
DNA (1233bp) protein (411aa)
major facilitator transporter id=5081288 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
major facilitator transporter
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1881_curated_21
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19067..20461)
DNA (1395bp) protein (465aa)
aldehyde dehydrogenase; K00154 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68]
Aldehyde dehydrogenase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VPE8_POLNA
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_bf_inoc_scaffold_1881_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20561..23164)
DNA (2604bp) protein (868aa)
protein disaggregation chaperone n=1 Tax=Comamonas sp. B-9 RepID=UPI000395CC55
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
ATP-dependent chaperone clpb; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_bf_inoc_scaffold_1881_curated_23

Not on your lists

23414..24265
DNA (852bp) protein (284aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phoC; major phosphate-irrepressible acid phosphatase (EC:3.1.3.2); K09474 acid phosphatase (class A) [EC:3.1.3.2]
Acid phosphatase n=1 Tax=uncultured bacterium RepID=Q2PT47_9BACT
SCNpilot_bf_inoc_scaffold_1881_curated_24
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24337..24912)
DNA (576bp) protein (192aa)
Micrococcal nuclease-like nuclease n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMD3_9BURK
nuclease
Tax=CG_Rhodof_04
SCNpilot_bf_inoc_scaffold_1881_curated_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25001..25972)
DNA (972bp) protein (324aa)
Twin-arginine translocation pathway signal n=2 Tax=Alicycliphilus denitrificans RepID=E8TUP2_ALIDB
twin-arginine translocation pathway signal protein
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:GAO26021.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_bf_inoc_scaffold_1881_curated_26

Not on your lists

comp(26033..26827)
DNA (795bp) protein (265aa)
4-oxalocrotonate decarboxylase (EC:4.1.1.77); K01617 4-oxalocrotonate decarboxylase [EC:4.1.1.77]
4-oxalocrotonate decarboxylase n=2 Tax=Bacteria RepID=A1W2K4_ACISJ
4-oxalocrotonate decarboxylase {ECO:0000313|EMBL:BAH89655.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_bf_inoc_scaffold_1881_curated_27
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26844..27164)
DNA (321bp) protein (107aa)
dmpG; 4-hydroxy-2-oxovalerate aldolase (EC:4.1.3.-); K01666 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xy
4-hydroxy-2-oxovalerate aldolase 3 n=1 Tax=Azoarcus sp. (strain BH72) RepID=HOA3_AZOSB
SCNpilot_bf_inoc_scaffold_1881_curated_28
unknown

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27425..27676
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_1881_curated_29

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comp(27869..28783)
DNA (915bp) protein (305aa)
Acetaldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042164}; EC=1.2.1.10 {ECO:0000256|HAMAP-Rule:MF_01657, ECO:0000256|SAAS:SAAS00042125};; Acetaldehyde dehydrogenase [acetylating] {ECO:0000256|HAMAP-Rule:MF_01657}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
acetaldehyde dehydrogenase (EC:1.2.1.10); K04073 acetaldehyde dehydrogenase [EC:1.2.1.10]
Acetaldehyde dehydrogenase n=1 Tax=uncultured bacterium RepID=K0ISZ1_9BACT
SCNpilot_bf_inoc_scaffold_1881_curated_30
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28901..29683)
DNA (783bp) protein (261aa)
4-oxalocrotonate decarboxylase (EC:4.1.1.77); K01617 4-oxalocrotonate decarboxylase [EC:4.1.1.77]
2-hydroxypenta-2,4-dienoate hydratase n=3 Tax=Bacteria RepID=C6KUK3_9BACT
2-oxopent-4-dienoate hydratase {ECO:0000313|EMBL:BAB62054.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
Displaying items 1-30 of 61 in total

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