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SCNpilot_expt_1000_bf_scaffold_650_curated

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_650_curated_1
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

84..575
DNA (492bp) protein (164aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=402626 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (strain 12J).;"
Lipoprotein signal peptidase n=2 Tax=Ralstonia pickettii RepID=B2UAQ5_RALPJ
SCNpilot_expt_1000_bf_scaffold_650_curated_2
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

707..1969
DNA (1263bp) protein (421aa)
dfp; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5]
phosphopantothenate synthase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI000380716B
Phosphopantothenate synthase {ECO:0000313|EMBL:ESJ26069.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_3
unknown

Not on your lists

1983..2519
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_650_curated_4

Not on your lists

2516..2965
DNA (450bp) protein (150aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase (DUTPase) (DUTP pyrophosphatase) {ECO:0000313|EMBL:CBH96974.1}; EC=3.6.1.23 {ECO:0000313|EMBL:CBH96974.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase (DUTPase) (DUTP pyrophosphatase) n=1 Tax=mine drainage metagenome RepID=E6PPX1_9ZZZZ
SCNpilot_expt_1000_bf_scaffold_650_curated_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3000..3461
DNA (462bp) protein (154aa)
Flavodoxin/nitric oxide synthase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B6K7_9BURK
Flavodoxin {ECO:0000313|EMBL:KGG89906.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_650_curated_6
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(3492..4430)
DNA (939bp) protein (313aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00492, ECO:0000256|SAAS:SAAS00118670};; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
transaldolase B (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2]
Transaldolase n=2 Tax=unclassified Opitutaceae RepID=H1IPT6_9BACT
SCNpilot_expt_1000_bf_scaffold_650_curated_7
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4474..5055)
DNA (582bp) protein (194aa)
Disulfide bond formation protein B n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IKX6_BORPD
dsbB; disulfide bond formation protein B; K03611 disulfide bond formation protein DsbB
Disulfide bond formation protein B {ECO:0000313|EMBL:CAP42506.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_8
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5086..6411)
DNA (1326bp) protein (442aa)
sulfide dehydrogenase (flavocytochrome), flavoprotein subunit (EC:1.-.-.-); K00540 [EC:1.-.-.-]
flavocytochrome C sulfide dehydrogenase n=1 Tax=Methyloversatilis universalis RepID=UPI0003629125
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_9
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6435..6770)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000379B32F
cytochrome c
Putative cytochrome c {ECO:0000313|EMBL:ABM95383.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_10
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7128..9437)
DNA (2310bp) protein (770aa)
ATP-dependent Clp protease ATP-binding subunit ClpA n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWY6_9BURK
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:EFV95058.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
clpA; ATP-dependent protease ATP-binding specificity subunit; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
SCNpilot_expt_1000_bf_scaffold_650_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9434..9742)
DNA (309bp) protein (103aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RWY7_9BURK
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_12
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10080..10283
DNA (204bp) protein (68aa)
Cold-shock DNA-binding domain protein n=3 Tax=Herbaspirillum RepID=D8IP93_HERSS
cspD; cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:ADJ62913.1}; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_13
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10439..11668)
DNA (1230bp) protein (410aa)
Carnitine dehydratase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QWN0_9BURK
Carnitine dehydratase {ECO:0000313|EMBL:ETF03763.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_650_curated_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11680..13953)
DNA (2274bp) protein (758aa)
Putative acyl-CoA dehydrogenase-like n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z426_9BRAD
putative acyl-CoA dehydrogenase-like
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14021..14992)
DNA (972bp) protein (324aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036D1168
putative Bug-like extracytoplasmic solute binding receptor, TTT family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15089..16228)
DNA (1140bp) protein (380aa)
Urocanate hydratase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H8G0_9BRAD
Urocanate hydratase {ECO:0000313|EMBL:ERF81028.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
putative acyl-CoA dehydrogenase fadE25
SCNpilot_expt_1000_bf_scaffold_650_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16355..17158
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000371A54B
enoyl-CoA hydratase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_18
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17160..17966
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037D1D9F
Uncharacterized protein {ECO:0000313|EMBL:ERF81027.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Pyruvate dehydrogenase, putative
SCNpilot_expt_1000_bf_scaffold_650_curated_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17979..18818)
DNA (840bp) protein (280aa)
CoA enzyme activase id=1781275 bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
CoA-substrate-specific enzyme activase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18853..19644)
DNA (792bp) protein (264aa)
CoA-substrate-specific enzyme activase id=14627370 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
CoA-substrate-specific enzyme activase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19641..21008)
DNA (1368bp) protein (456aa)
2-hydroxyglutaryl-CoA dehydratase subunit D; K04113 benzoyl-CoA reductase subunit [EC:1.3.7.8]
Benzoyl-CoA reductase, subunit B id=1781271 bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21005..22228)
DNA (1224bp) protein (408aa)
benzoyl-CoA reductase subunit C (EC:1.3.7.8); K04112 benzoyl-CoA reductase subunit [EC:1.3.7.8]
Putative Benzoyl-CoA reductase, subunit C id=1781270 bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_650_curated_23
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22513..23478
DNA (966bp) protein (322aa)
Extra-cytoplasmatic solute receptor n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LBR6_RALME
bug; ABC transporter substrate-binding protein
Extra-cytoplasmatic solute receptor {ECO:0000313|EMBL:ABF12410.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_24
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23534..24754)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z542_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM88142.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_650_curated_25
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24897..25742)
DNA (846bp) protein (282aa)
Transcriptional regulator, GntR family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTK7_9BRAD
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCE09795.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
transcriptional regulator, GntR family
SCNpilot_expt_1000_bf_scaffold_650_curated_26
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25761..26576)
DNA (816bp) protein (272aa)
Putative transcriptional regulator, GntR-family (HTH) n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LBT6_RALME
GntR family transcriptional regulator
Putative transcriptional regulator, GntR-family (HTH) {ECO:0000313|EMBL:ABF12390.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_27
Pseudomonas sp. GM78, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26818..27942
DNA (1125bp) protein (375aa)
ada; bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase (EC:2.1.1.63); K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
O-6-methylguanine DNA methyltransferase n=1 Tax=Pseudomonas sp. GM78 RepID=J3I8V4_9PSED
O-6-methylguanine DNA methyltransferase {ECO:0000313|EMBL:EJN18488.1}; TaxID=1144337 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM78.;"
SCNpilot_expt_1000_bf_scaffold_650_curated_28
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27946..29439)
DNA (1494bp) protein (498aa)
Major facilitator superfamily MFS_1 n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BZQ8_DELAS
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABX35966.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_29
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29530..30501
DNA (972bp) protein (324aa)
Transcriptional regulator, LysR family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AX35_DELSC
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEF90433.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_expt_1000_bf_scaffold_650_curated_30
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30498..31631)
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037CCF5C
Metallo-beta-lactamase {ECO:0000313|EMBL:GAD22327.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein rbh
Displaying items 1-30 of 37 in total

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