ggKbase home page

SCNpilot_expt_1000_bf_scaffold_318_curated

Search features with annotation key words

Displaying items 1-30 of 133 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_318_curated_1
unknown

Not on your lists

1..252
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_318_curated_2
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

500..1885
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VL82_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45574.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_expt_1000_bf_scaffold_318_curated_3
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1882..2433
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VL83_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45575.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_expt_1000_bf_scaffold_318_curated_4
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2430..2738
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VL84_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL45576.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_expt_1000_bf_scaffold_318_curated_5
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2842..3081
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SIH4_NOCSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL81609.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
SCNpilot_expt_1000_bf_scaffold_318_curated_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3218..5053)
DNA (1836bp) protein (612aa)
Dihydroxy-acid dehydratase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2HW74_9BURK
Dihydroxy-acid dehydratase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
SCNpilot_expt_1000_bf_scaffold_318_curated_7
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5184..5825)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K2G9_STEMA
hypothetical protein
Tax=CG_Rhodof_02
SCNpilot_expt_1000_bf_scaffold_318_curated_8
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5851..6303)
DNA (453bp) protein (151aa)
Putative transcriptional regulator, ModE family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNM8_VEREI
ModE family transcriptional regulator; K02019 molybdate transport system regulatory protein
Putative transcriptional regulator, ModE family {ECO:0000313|EMBL:ABM59235.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_1000_bf_scaffold_318_curated_9
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6426..7754
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Burkholderia cepacia GG4 RepID=J7JKR0_BURCE
Uncharacterized protein {ECO:0000313|EMBL:EZP51305.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_318_curated_10
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7955..8353
DNA (399bp) protein (133aa)
Putative fluoride ion transporter CrcB n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YBU9_THIV6
camphor resistance protein CrcB
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_318_curated_11
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8367..8813
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A6D26
hypothetical protein
Tax=CG_Rhodocyc_01
SCNpilot_expt_1000_bf_scaffold_318_curated_12
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8810..10027
DNA (1218bp) protein (406aa)
Glutathione-regulated potassium-proton antiporter n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HMZ9_PSEUO
hypothetical protein
Tax=GWA2_Gallionellales_60_142_curated
SCNpilot_expt_1000_bf_scaffold_318_curated_13
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10024..10476
DNA (453bp) protein (151aa)
Universal stress protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HNF0_PSEUO
UspA domain-containing protein
Tax=GWA2_Gallionellales_60_142_curated
SCNpilot_expt_1000_bf_scaffold_318_curated_14
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10513..11046
DNA (534bp) protein (178aa)
ppa; inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
Inorganic pyrophosphatase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B562_9PROT
SCNpilot_expt_1000_bf_scaffold_318_curated_15
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11081..11551
DNA (471bp) protein (157aa)
soluble P-type ATPase n=1 Tax=Desulfovibrio longus RepID=UPI0003B582E8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS25256.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
SCNpilot_expt_1000_bf_scaffold_318_curated_16
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11637..13154)
DNA (1518bp) protein (506aa)
DNA mismatch repair protein MutS domain protein n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MTZ6_9THEO
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP68119.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
DNA mismatch repair protein MutS domain-containing protein
SCNpilot_expt_1000_bf_scaffold_318_curated_17
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13151..14701)
DNA (1551bp) protein (517aa)
DNA mismatch repair protein MutS domain protein n=1 Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MTZ7_9THEO
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP68120.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
DNA mismatch repair protein MutS domain-containing protein
SCNpilot_expt_1000_bf_scaffold_318_curated_18
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14765..16093
DNA (1329bp) protein (443aa)
Major facilitator superfamily protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y9D8_9RHOO
Major facilitator superfamily protein {ECO:0000313|EMBL:ENO88155.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
putative membrane transport protein; K08224 MFS transporter, YNFM family, putative membrane transport protein
SCNpilot_expt_1000_bf_scaffold_318_curated_19
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16131..16976
DNA (846bp) protein (282aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUE3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR69603.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein; K09709 mesaconyl-C4 CoA hydratase
SCNpilot_expt_1000_bf_scaffold_318_curated_20
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17056..17907
DNA (852bp) protein (284aa)
HpcH/HpaI aldolase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9D8Y5_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_318_curated_21
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18067..18858
DNA (792bp) protein (264aa)
GTP cyclohydrolase FolE2 {ECO:0000256|HAMAP-Rule:MF_01527}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_01527, ECO:0000256|SAAS:SAAS00016722};; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
folE; GTP cyclohydrolase FolE (EC:3.5.4.16)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002D49358
SCNpilot_expt_1000_bf_scaffold_318_curated_22
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18887..20098
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003130B12
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:ABD71831.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCNpilot_expt_1000_bf_scaffold_318_curated_23
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20118..21782)
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003787C06
diguanylate cyclase
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
SCNpilot_expt_1000_bf_scaffold_318_curated_24
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21919..22380)
DNA (462bp) protein (154aa)
Sensor protein FixL {ECO:0000313|EMBL:EXI80254.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EXI80254.1};; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI000372880A
sensory box protein
SCNpilot_expt_1000_bf_scaffold_318_curated_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22472..23236
DNA (765bp) protein (255aa)
Metallophosphoesterase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QW5_RHOFD
metallophosphoesterase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
SCNpilot_expt_1000_bf_scaffold_318_curated_26
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23264..24511)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5X1_AROAE
hypothetical protein; K07234 uncharacterized protein involved in response to NO
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_expt_1000_bf_scaffold_318_curated_27
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24505..25467)
DNA (963bp) protein (321aa)
ABC transporter n=1 Tax=Thauera aminoaromatica S2 RepID=N6YRQ6_9RHOO
ABC transporter family protein {ECO:0000313|EMBL:KIN89730.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_318_curated_28
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25446..26237)
DNA (792bp) protein (264aa)
Binding-protein-dependent transporter system inner membrane protein n=1 Tax=Thauera aminoaromatica S2 RepID=N6YR74_9RHOO
Binding-protein-dependent transporter system inner membrane protein {ECO:0000313|EMBL:ENO84862.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
binding-protein-dependent transporters inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_318_curated_29
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26234..27271)
DNA (1038bp) protein (346aa)
Periplasmic component of ABC-type transport system n=1 Tax=Thauera sp. 27 RepID=N6YEU2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EXF42852.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
periplasmic component of ABC-type transport system; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_318_curated_30
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27428..28426)
DNA (999bp) protein (333aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIJ6_9BURK
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
Displaying items 1-30 of 133 in total

View Taxonomy