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SCNpilot_expt_1000_bf_scaffold_370_curated

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Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_370_curated_1
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52..786
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALMg9 RepID=UPI0003793582
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCNpilot_expt_1000_bf_scaffold_370_curated_2
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1153..1488)
DNA (336bp) protein (112aa)
Putative truncated transposase n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1KBY1_AZOSB
transposase
Putative truncated transposase {ECO:0000313|EMBL:CAL96337.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
SCNpilot_expt_1000_bf_scaffold_370_curated_3
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1683..2024
DNA (342bp) protein (114aa)
transcription initiation protein n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=UPI0003774F21
Transcription initiation protein {ECO:0000313|EMBL:EYS90464.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_370_curated_4
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2096..2401
DNA (306bp) protein (102aa)
Transposase, IS4 family n=1 Tax=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) RepID=Q0BE51_BURCM
transposase, IS4 family protein; K07481 transposase, IS5 family
Transposase, IS4 family {ECO:0000313|EMBL:ABI87572.1}; TaxID=339670 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia; cepacia (strain AMMD)).;"
SCNpilot_expt_1000_bf_scaffold_370_curated_5
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2414..3130
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q2I4_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL26843.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCNpilot_expt_1000_bf_scaffold_370_curated_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3192..3950)
DNA (759bp) protein (253aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
Short-chain dehydrogenase id=2247805 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
SCNpilot_expt_1000_bf_scaffold_370_curated_7
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4174..5517
DNA (1344bp) protein (448aa)
gdhA2; glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Glutamate dehydrogenase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J5P7_9BURK
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
SCNpilot_expt_1000_bf_scaffold_370_curated_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5531..6388
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00036C0BC2
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SCNpilot_expt_1000_bf_scaffold_370_curated_9
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6480..7259)
DNA (780bp) protein (260aa)
Uncharacterized protein with SCP/PR1 domains n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTN3_9BURK
Uncharacterized protein with SCP/PR1 domains {ECO:0000313|EMBL:EHR69106.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_370_curated_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7440..7706
DNA (267bp) protein (89aa)
hypothetical protein; K08982 putative membrane protein
Putative uncharacterized protein id=2234641 bin=GWB2_Nitrospirae_rel_47_37 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_expt_1000_bf_scaffold_370_curated_11
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7719..9347)
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1G0X4_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EOD65218.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
ilvB; acetolactate synthase I/II/III large subunit
SCNpilot_expt_1000_bf_scaffold_370_curated_12
Saccharomonospora xinjiangensis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9373..10527)
DNA (1155bp) protein (385aa)
Glycosyl Hydrolase Family 88 n=1 Tax=Saccharomonospora xinjiangensis XJ-54 RepID=I0V4H9_9PSEU
Glycosyl Hydrolase Family 88 {ECO:0000313|EMBL:EID55032.1}; TaxID=882086 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora xinjiangensis XJ-54.;"
unsaturated glucuronyl hydrolase
SCNpilot_expt_1000_bf_scaffold_370_curated_13
Marinomonas sp. S3726, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10531..11277)
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YFX3_9GAMM
IclR family transcriptional regulator {ECO:0000313|EMBL:KJZ14898.1}; TaxID=579484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. S3726.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_370_curated_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11427..12221)
DNA (795bp) protein (265aa)
Transcriptional regulator, IclR family protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVY5_RUBGI
Transcriptional regulator, IclR family {ECO:0000313|EMBL:CDM25174.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_370_curated_15
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12445..13284
DNA (840bp) protein (280aa)
Putative cyclase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HVY4_RUBGI
putative cyclase
Putative cyclase {ECO:0000313|EMBL:BAL97171.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
SCNpilot_expt_1000_bf_scaffold_370_curated_16
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13286..13633
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 PF5_9BRAD">RepID=H0SPF5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD96082.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
Cupin 2 conserved barrel domain-containing protein
SCNpilot_expt_1000_bf_scaffold_370_curated_17
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13630..14430
DNA (801bp) protein (267aa)
oxidoreductase n=1 Tax=Rhizobium loti RepID=UPI00037AB7C6
Oxidoreductase {ECO:0000313|EMBL:KEZ03418.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_370_curated_18
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14434..15345
DNA (912bp) protein (304aa)
paaH; 3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase PaaH {ECO:0000313|EMBL:BAL93495.1}; EC=1.1.1.157 {ECO:0000313|EMBL:BAL93495.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
3-hydroxyacyl-CoA dehydrogenase PaaH n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HKF8_RUBGI
SCNpilot_expt_1000_bf_scaffold_370_curated_19
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15424..16359
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1T9P2_BURSG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADN56688.1}; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
SCNpilot_expt_1000_bf_scaffold_370_curated_20
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16421..18130
DNA (1710bp) protein (570aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P4U6_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI75675.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_370_curated_21
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18147..19511
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002EDDCD8
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_expt_1000_bf_scaffold_370_curated_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19721..20683
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003713A0C
BNR domain-containing protein {ECO:0000313|EMBL:GAO20743.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_370_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20680..23142
DNA (2463bp) protein (821aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036F9369
Transporter {ECO:0000313|EMBL:GAO20744.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
transporter; K07003
SCNpilot_expt_1000_bf_scaffold_370_curated_24
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

23148..23906
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NYR2_9BACT
hypothetical protein
Tax=RBG_16_Actinobacteria_64_13_curated
SCNpilot_expt_1000_bf_scaffold_370_curated_25
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

23931..24794
DNA (864bp) protein (288aa)
Ethyl tert-butyl ether degradation EthD n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P4S5_9BACT
Tax=RBG_16_Actinobacteria_64_13_curated
SCNpilot_expt_1000_bf_scaffold_370_curated_26
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24813..26036
DNA (1224bp) protein (408aa)
Major facilitator family transporter 5 (Probable multidrug efflux transporter) n=1 Tax=Pseudomonas fluorescens F113 RepID=G8Q8B7_PSEFL
major facilitator family transporter
Major facilitator family transporter 5 (Probable multidrug efflux transporter) {ECO:0000313|EMBL:AEV60862.1}; TaxID=1114970 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens F113.;"
SCNpilot_expt_1000_bf_scaffold_370_curated_27
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26070..27992
DNA (1923bp) protein (641aa)
FAD dependent oxidoreductase n=1 Tax=Burkholderia sp. H160 RepID=B5WAM5_9BURK
FAD dependent oxidoreductase {ECO:0000313|EMBL:EEA04593.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
Phytoene dehydrogenase-related protein
SCNpilot_expt_1000_bf_scaffold_370_curated_28
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27989..28759
DNA (771bp) protein (257aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. H160 RepID=B5WAN4_9BURK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEA04602.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
3-oxoacyl-ACP reductase
SCNpilot_expt_1000_bf_scaffold_370_curated_29
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28779..29522
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia sp. H160 RepID=B5WAL9_9BURK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEA04587.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
SCNpilot_expt_1000_bf_scaffold_370_curated_30
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

29537..29959
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI00036E6EDD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK05259.1}; TaxID=504728 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21); (Thermus ruber).;"
Displaying items 1-30 of 70 in total

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