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SCNpilot_bf_inoc_scaffold_50_curated

Search features with annotation key words

Displaying items 1-30 of 412 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_bf_inoc_scaffold_50_curated_1
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1358..2296
DNA (939bp) protein (313aa)
Diacylglycerol kinase catalytic region n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKR1_ALKOO
diacylglycerol kinase catalytic subunit; K07029
Diacylglycerol kinase catalytic region {ECO:0000313|EMBL:ABW20393.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_50_curated_2
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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2419..3861
DNA (1443bp) protein (481aa)
Aor transcriptional regulator id=2024360 bin=GWB2_Clostridiales_37_7 species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_50_curated_3
unknown

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4379..4789
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_4
unknown

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4793..5182
DNA (390bp) protein (130aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_5
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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5195..5908
DNA (714bp) protein (238aa)
Putative uncharacterized protein id=2273536 bin=GWB2_Clostridiales_37_7 species=Cellulosilyticum lentocellum genus=Cellulosilyticum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_bf_inoc_scaffold_50_curated_6
unknown

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5912..6568
DNA (657bp) protein (219aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_7
Dethiobacter alkaliphilus, Dethiobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7098..8519
DNA (1422bp) protein (474aa)
RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GET1_9FIRM
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:EEG78113.1}; TaxID=555088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Dethiobacter.;" source="Dethiobacter alkaliphilus AHT 1.;"
RNA-directed DNA polymerase
SCNpilot_bf_inoc_scaffold_50_curated_8
Firmicutes bacterium CAG:536, Firmicutes, Bacteria

Not on your lists

8642..9100
DNA (459bp) protein (153aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1263028 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:536.;"
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Firmicutes bacterium CAG:536 RepID=R5Z490_9FIRM
CMP/dCMP deaminase zinc-binding protein
SCNpilot_bf_inoc_scaffold_50_curated_9
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9627..11483
DNA (1857bp) protein (619aa)
HD-GYP domain protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CDJ7_9CLOT
HD-GYP domain protein {ECO:0000313|EMBL:EOD00365.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
putative domain HDIG-containing protein
SCNpilot_bf_inoc_scaffold_50_curated_10
ACD4, Gracilibacteria, Bacteria

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11473..13365
DNA (1893bp) protein (631aa)
HD-GYP domain protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CDJ7_9CLOT
putative PAS/PAC sensor protein
Tax=ACD4
SCNpilot_bf_inoc_scaffold_50_curated_11
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13390..15054
DNA (1665bp) protein (555aa)
DNA polymerase III subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III subunits gamma and tau n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CUL8_9CLOT
DNA polymerase III subunit gamma/tau {ECO:0000313|EMBL:KGG80916.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
SCNpilot_bf_inoc_scaffold_50_curated_12
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15080..15418
DNA (339bp) protein (113aa)
Nucleoid-associated protein M918_23205 n=1 Tax=Clostridium sp. BL8 RepID=T0NFH0_9CLOT
transcriptional regulatory protein; K09747 hypothetical protein
Nucleoid-associated protein M918_23205 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
SCNpilot_bf_inoc_scaffold_50_curated_13
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15428..16027
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AXL9_CLOA9
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
recR; recombination protein RecR
SCNpilot_bf_inoc_scaffold_50_curated_14
unknown

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16132..17286
DNA (1155bp) protein (385aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_15
Thermoanaerobacter mathranii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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17286..18461
DNA (1176bp) protein (392aa)
secretion system protein E n=1 Tax=Thermoanaerobacter indiensis RepID=UPI000369007D
type II secretion system protein E; K02283 pilus assembly protein CpaF
Type II secretion system protein E {ECO:0000313|EMBL:ADH59849.1}; TaxID=583358 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3).;"
SCNpilot_bf_inoc_scaffold_50_curated_16
unknown

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18458..19336
DNA (879bp) protein (293aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_17
unknown

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19379..19984
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_18
unknown

Not on your lists

19997..20236
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_19
unknown

Not on your lists

20236..20622
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_20
unknown

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20624..21070
DNA (447bp) protein (149aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_21
unknown

Not on your lists

21147..21713
DNA (567bp) protein (189aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_22
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

Not on your lists

21807..23375
DNA (1569bp) protein (523aa)
Multi-sensor hybrid histidine kinase id=2152209 bin=GWE2_Bacteroidetes_29_8 species=Cyanobacterium stanieri genus=Cyanobacterium taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWE2_Bacteroidetes_29_8 organism_group=Bacteroidetes organism_desc=Good
integral membrane sensor hybrid histidine kinase
Tax=GWE2_Bacteroidetes_29_8_curated
SCNpilot_bf_inoc_scaffold_50_curated_23
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23535..24689
DNA (1155bp) protein (385aa)
nucleic acid methylase; K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
Nucleic acid methylase n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B9P0_CLOBO
Nucleic acid methylase {ECO:0000313|EMBL:KDR96224.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
SCNpilot_bf_inoc_scaffold_50_curated_24
unknown

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24711..25808
DNA (1098bp) protein (366aa)

This feature has no annotations

SCNpilot_bf_inoc_scaffold_50_curated_25
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25821..26537
DNA (717bp) protein (239aa)
Colicin V production protein n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R6W4_9CLOT
hypothetical protein
Colicin V production protein {ECO:0000313|EMBL:EPR13727.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
SCNpilot_bf_inoc_scaffold_50_curated_26
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26550..27146
DNA (597bp) protein (199aa)
SirA family protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TJA2_ALKMQ
SirA family protein
SirA family protein {ECO:0000313|EMBL:ABR46270.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
SCNpilot_bf_inoc_scaffold_50_curated_27
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27246..27518
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B311_CLOA9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFS79849.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
SCNpilot_bf_inoc_scaffold_50_curated_28
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27502..27708
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M2G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AHM57494.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM 3953.;"
hypothetical protein
SCNpilot_bf_inoc_scaffold_50_curated_29
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27825..28112
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RS6_ALKOO
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
30S ribosomal protein S6 {ECO:0000255|HAMAP-Rule:MF_00360}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
SCNpilot_bf_inoc_scaffold_50_curated_30
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28133..28576
DNA (444bp) protein (148aa)
Single-stranded DNA-binding protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRB9_ALKMQ
single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
Displaying items 1-30 of 412 in total

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