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SCNpilot_expt_1000_bf_scaffold_1188_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1188_curated_1
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..189)
DNA (189bp) protein (63aa)
Probabable IunH n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XCC1_SINMM
hypothetical protein
Inosine/uridine-preferring nucleoside hydrolase {ECO:0000313|EMBL:AHK46979.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(186..617)
DNA (432bp) protein (144aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=2 Tax=Rhizobium meliloti RepID=F7XCC2_SINMM
Glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:AEH82628.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(636..770)
DNA (135bp) protein (45aa)
ABC transporter permease n=1 Tax=Rhizobium meliloti RepID=UPI0002F72365
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AEH82629.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_4
unknown

Not on your lists

1789..1980
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI000376D8BB
SCNpilot_expt_1000_bf_scaffold_1188_curated_5
unknown

Not on your lists

2304..2423
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1188_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2509..4098)
DNA (1590bp) protein (530aa)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:EYR77875.1}; EC=3.6.3.17 {ECO:0000313|EMBL:EYR77875.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWJ5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1188_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4237..5025)
DNA (789bp) protein (263aa)
ABC-type transport system substrate-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZI5_9RHIZ
ABC-type transport system substrate-binding protein {ECO:0000313|EMBL:EYR81954.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1188_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5301..5633)
DNA (333bp) protein (111aa)
NIPSNAP family containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3K0_9RHIZ
NIPSNAP superfamily {ECO:0000313|EMBL:AHK46984.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1188_curated_9
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5630..7231)
DNA (1602bp) protein (534aa)
CHDH; Choline dehydrogenase, mitochondrial (EC:1.1.99.1)
Choline dehydrogenase n=3 Tax=Rhizobium meliloti RepID=F6C062_SINMB
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:AEH82634.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7235..8086)
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=F7XCC9_SINMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH82635.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8295..8831
DNA (537bp) protein (179aa)
HTH-type transcriptional regulator RutR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ50_9RHIZ
HTH-type transcriptional regulator RutR {ECO:0000313|EMBL:EYR81950.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Transcription regulator TetR family
SCNpilot_expt_1000_bf_scaffold_1188_curated_12
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9016..9792
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BHW8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL51059.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1188_curated_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9829..10563)
DNA (735bp) protein (245aa)
Transcriptional regulator, GntR family with UTRA sensor domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F750_9RHIZ
Transcriptional regulator, GntR family with UTRA sensor domain-containing protein {ECO:0000313|EMBL:EHS51367.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hutC; GntR family transcriptional regulator; K05836 GntR family transcriptional regulator, histidine utilization repressor rbh
SCNpilot_expt_1000_bf_scaffold_1188_curated_14
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10700..12070
DNA (1371bp) protein (457aa)
Formiminoglutamate deiminase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F751_9RHIZ
Formiminoglutamate deiminase {ECO:0000313|EMBL:EHS51368.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hutF; Formiminoglutamate deiminase
SCNpilot_expt_1000_bf_scaffold_1188_curated_15
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12123..13160
DNA (1038bp) protein (346aa)
ABC-type glycine betaine transport, periplasmic subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F752_9RHIZ
ABC-type glycine betaine transport, periplasmic subunit {ECO:0000313|EMBL:EHS51369.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
proX; proline/glycine betaine ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_1188_curated_16
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13244..14119
DNA (876bp) protein (292aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F753_9RHIZ
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EHS51370.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
proW; histidine transport system permease ABC transporter protein
SCNpilot_expt_1000_bf_scaffold_1188_curated_17
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14138..14437)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Burkholderia thailandensis RepID=UPI00016A799E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG31455.1}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter; sp. (strain OCh 114)) (Roseobacter denitrificans).;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_18
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14658..14987
DNA (330bp) protein (110aa)
proV; proline/glycine betaine ABC transporter ATPase; K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
ABC transporter related protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F754_9RHIZ
ABC transporter related protein {ECO:0000313|EMBL:EHS51371.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_19
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14980..16488
DNA (1509bp) protein (503aa)
hutH; histidine ammonia-lyase; K01745 histidine ammonia-lyase [EC:4.3.1.3] rbh
Phenylalanine/histidine ammonia-lyase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F755_9RHIZ
Phenylalanine/histidine ammonia-lyase {ECO:0000313|EMBL:EHS51372.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_20
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16485..17702
DNA (1218bp) protein (406aa)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hutI; imidazolonepropionase; K01468 imidazolonepropionase [EC:3.5.2.7]
Imidazolonepropionase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F756_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1188_curated_21
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17699..18508
DNA (810bp) protein (270aa)
hutG; N-formylglutamate amidohydrolase; K01479 formiminoglutamase [EC:3.5.3.8]
N-formylglutamate amidohydrolase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F759_9RHIZ
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:EHS51376.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_1188_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18510..20183
DNA (1674bp) protein (558aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E
hutU; urocanate hydratase; K01712 urocanate hydratase [EC:4.2.1.49] rbh
Urocanate hydratase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AGB3_RHIRD
SCNpilot_expt_1000_bf_scaffold_1188_curated_23
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20304..20873
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VNI4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX39324.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein; K09975 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1188_curated_24
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21003..21707
DNA (705bp) protein (235aa)
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U529_9RHIZ
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:ENN87719.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
oxidoreductase, short chain dehydrogenase/reductase family
SCNpilot_expt_1000_bf_scaffold_1188_curated_25
GWB1_Spirochaetes_59_5_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

21750..22307
DNA (558bp) protein (186aa)
Putative uncharacterized protein id=3591434 bin=GWB1_Spirochaetes_59_5 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=GWB1_Spirochaetes_59_5_curated
SCNpilot_expt_1000_bf_scaffold_1188_curated_26
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22499..22789)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR96_NITWN
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1188_curated_27
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22799..23833)
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR95_NITWN
hypothetical protein; K15342 CRISP-associated protein Cas1
SCNpilot_expt_1000_bf_scaffold_1188_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23830..24513)
DNA (684bp) protein (228aa)
CRISPR-associated protein Cas4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKZ8_9RHIZ
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EYR78098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07464 putative RecB family exonuclease
SCNpilot_expt_1000_bf_scaffold_1188_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24517..25470)
DNA (954bp) protein (318aa)
CRISPR-associated protein, Csd2 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDW0_9RHIZ
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:EYR78100.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CRISPR-associated Csd2 family protein
SCNpilot_expt_1000_bf_scaffold_1188_curated_30
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25467..27215)
DNA (1749bp) protein (583aa)
CRISPR-associated protein, Csd1 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR92_NITWN
CRISPR-associated Csd1 family protein
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:ABA05199.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Displaying items 1-30 of 38 in total

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