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SCNpilot_expt_1000_bf_scaffold_3070_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3070_curated_1
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1025
DNA (1023bp) protein (341aa)
polysaccharide deacetylase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037CDCEA
Polysaccharide deacetylase protein {ECO:0000313|EMBL:AJD43302.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein; K09798 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3070_curated_2
Labrenzia sp. C1B10, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1518..1607
DNA (90bp) protein (30aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7G901_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERP93967.1}; TaxID=1397530 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia sp. C1B10.;"
putative AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3070_curated_3
unknown

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2122..2286
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3070_curated_4
Hyphomonas sp. CY54-11-8, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2238..2633)
DNA (396bp) protein (132aa)
Glyoxalase-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHQ9_9SPHN
Glyoxalase {ECO:0000313|EMBL:KCZ47219.1}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
glyoxalase-family protein
SCNpilot_expt_1000_bf_scaffold_3070_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2807..3304)
DNA (498bp) protein (166aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
bfr; bacterioferritin (EC:1.16.3.1)
Bacterioferritin n=2 Tax=Rhizobium radiobacter RepID=G6XTW0_RHIRD
SCNpilot_expt_1000_bf_scaffold_3070_curated_6
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3270..3581)
DNA (312bp) protein (104aa)
Uncharacterized protein n=8 Tax=Rhizobium meliloti RepID=F7X0J5_SINMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH80531.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_3070_curated_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3868..7296)
DNA (3429bp) protein (1143aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Error-prone DNA polymerase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSB5_RHITR
error-prone DNA polymerase
SCNpilot_expt_1000_bf_scaffold_3070_curated_8
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7293..8717)
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000372DA17
Nucleotidyltransferase protein {ECO:0000313|EMBL:ENN84271.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nucleotidyltransferase/DNA polymerase
SCNpilot_expt_1000_bf_scaffold_3070_curated_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8758..9714)
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQS7_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB73066.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3070_curated_10
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9934..10374
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F097_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS53890.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3070_curated_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10472..10678)
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Rhizobium etli RepID=S5SPD5_RHIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC81608.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_expt_1000_bf_scaffold_3070_curated_12
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10675..11583)
DNA (909bp) protein (303aa)
citEch; citrate lyase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
Citrate (Pro-3S)-lyase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HCX1_9RHIZ
Citrate (Pro-3S)-lyase {ECO:0000313|EMBL:EPE95990.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_expt_1000_bf_scaffold_3070_curated_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11696..11923
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2KWX2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN50156.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3070_curated_14
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12059..12226
DNA (168bp) protein (56aa)
leuD; isopropylmalate isomerase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=LEUD_AGRVS
Displaying 14 items

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