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SCNpilot_expt_1000_bf_scaffold_1909_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1909_curated_1
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..918
DNA (918bp) protein (306aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium sp. CF080 RepID=J3B2B6_9RHIZ
Aldehyde dehydrogenase {ECO:0000313|EMBL:EXL06518.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_2
unknown

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1257..1844
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1909_curated_3
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2133..3287
DNA (1155bp) protein (385aa)
ABC transporter substrate binding protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1I0_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:GAK71938.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1909_curated_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3284..3874
DNA (591bp) protein (197aa)
Response regulator antiterminator domain-containing protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H9_AGRVS
Response regulator antiterminator domain-containing protein
Response regulator antiterminator domain-containing protein {ECO:0000313|EMBL:ACM38727.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_5
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4459..4785
DNA (327bp) protein (109aa)
hydrolases or acyltransferases (alpha/beta hydrolase superfamily); K01259 proline iminopeptidase [EC:3.4.11.5]
Hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H8_AGRVS
Hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:ACM38726.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_6
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4876..6573
DNA (1698bp) protein (566aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H7_AGRVS
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAK71941.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
hypothetical protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1909_curated_7
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6657..7694
DNA (1038bp) protein (346aa)
ABC transporter membrane spanning protein (Dipeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H6_AGRVS
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK71942.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
dppC; peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1909_curated_8
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7705..8676
DNA (972bp) protein (324aa)
ABC transporter membrane spanning protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H5_AGRVS
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK71943.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1909_curated_9
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8681..9706
DNA (1026bp) protein (342aa)
ABC transporter nucleotide binding/ATPase protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H4_AGRVS
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAK71944.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ABC transporter nucleotide binding/ATPase (oligopeptide); K02031 peptide/nickel transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1909_curated_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9703..10692
DNA (990bp) protein (330aa)
ABC transporter nucleotide binding/ATPase protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1H3_AGRVS
ABC transporter nucleotide binding/ATPase (oligopeptide); K02032 peptide/nickel transport system ATP-binding protein
ABC transporter nucleotide binding/ATPase protein (Oligopeptide) {ECO:0000313|EMBL:ACM38721.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10696..11157)
DNA (462bp) protein (154aa)
MarR family transcriptional regulator protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SND6_RHIET
MarR family transcriptional regulator protein
MarR family transcriptional regulator protein {ECO:0000313|EMBL:AGS23164.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_12
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11244..12572)
DNA (1329bp) protein (443aa)
ttuD2; hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81]
TtuD3 hydroxypyruvate reductase n=1 Tax=Rhizobium giardinii RepID=UPI0003661BB8
Hydroxypyruvate reductase {ECO:0000313|EMBL:KEC73079.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12626..14281)
DNA (1656bp) protein (552aa)
glucose-methanol-choline oxidoreductase; K00119 [EC:1.1.99.-]
alanine-phosphoribitol ligase n=1 Tax=Rhizobium giardinii RepID=UPI0003783B39
Oxidoreductase {ECO:0000313|EMBL:EGP55868.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14413..15180)
DNA (768bp) protein (256aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6E5A0_SINMK
3-oxoacyl-ACP reductase
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EHK74045.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_1909_curated_15
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15177..16601)
DNA (1425bp) protein (475aa)
GMC family oxidoreductase n=1 Tax=Rhizobium giardinii RepID=UPI000381D157
Oxidoreductase protein {ECO:0000313|EMBL:AJD41898.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
dehydrogenase
Displaying 15 items

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