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SCNpilot_expt_1000_bf_scaffold_1220_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1220_curated_1
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..250
DNA (249bp) protein (83aa)
ATP-dependent Zn protease n=1 Tax=Rhizobium sp. CF142 RepID=J2L2L1_9RHIZ
ATPase central domain-containing protein {ECO:0000313|EMBL:CDN92216.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_1220_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

627..941
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XZ48_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EHH03934.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1156..3246)
DNA (2091bp) protein (697aa)
Phage integrase family protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XZ49_RHIRD
Phage integrase family protein {ECO:0000313|EMBL:EHH03935.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
phage integrase family protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_4
unknown

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comp(3555..4208)
DNA (654bp) protein (218aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1220_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4768..4944
DNA (177bp) protein (59aa)
oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WBQ4_RHILT
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJC82653.1}; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
SCNpilot_expt_1000_bf_scaffold_1220_curated_6
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5047..5859
DNA (813bp) protein (271aa)
FhuC-like siderophore ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW43_RHITR
FhuC-like siderophore ABC transporter, ATP-binding protein
FhuC-like siderophore ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB74931.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1220_curated_7
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5849..6760
DNA (912bp) protein (304aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2WAR7_9RHIZ
fhuD; ferrichrome-iron ABC transporter; K02016 iron complex transport system substrate-binding protein
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EJK79933.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_1220_curated_8
unknown

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comp(6924..7106)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1220_curated_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7810..8715
DNA (906bp) protein (302aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Rhizobium sp. AP16 RepID=J2DB35_9RHIZ
Fe(3+)-ferrichrome ABC transporter permease protein {ECO:0000313|EMBL:GAJ93682.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_10
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8731..9423)
DNA (693bp) protein (231aa)
GntR family transcriptional regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PK26_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF61273.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1220_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9752..10807
DNA (1056bp) protein (352aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1N6_9RHIZ
spermidine/putrescine ABC transporter ATPase; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_12
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10809..11732
DNA (924bp) protein (308aa)
ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI00036BAC1E
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHH12756.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
binding-protein-dependent transport system inner membrane protein; K11071 spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_13
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11725..12531
DNA (807bp) protein (269aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00035D644E
Putrescine transporter subunit: membrane component of ABC superfamily {ECO:0000313|EMBL:CCV05548.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_14
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12545..13579
DNA (1035bp) protein (345aa)
Putrescine-binding periplasmic protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y677_9RHIZ
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13756..14937
DNA (1182bp) protein (394aa)
6-aminohexanoate-dimer hydrolase NylB {ECO:0000313|EMBL:EYR77379.1}; EC=3.5.1.46 {ECO:0000313|EMBL:EYR77379.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
6-aminohexanoate-dimer hydrolase (EC:3.5.1.46)
6-aminohexanoate-dimer hydrolase NylB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES37_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1220_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14965..16635
DNA (1671bp) protein (557aa)
Amidohydrolase 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUK4_9RHIZ
Amidohydrolase 3 {ECO:0000313|EMBL:EYR77378.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative TIM-barrel fold metal-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_1220_curated_17
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16790..18148
DNA (1359bp) protein (453aa)
glnA; glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase catalytic region n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FD26_9RHIZ
Glutamine synthetase catalytic region {ECO:0000313|EMBL:EHS49296.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_1220_curated_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18150..19457
DNA (1308bp) protein (436aa)
ordL; oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-] rbh
gamma-glutamylputrescine oxidoreductase n=1 Tax=Rhizobium radiobacter RepID=UPI00037263F8
Gamma-glutamylputrescine oxidoreductase {ECO:0000313|EMBL:EPR08670.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_1220_curated_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19758..20273
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CRD5_AGRT5
Uncharacterized protein {ECO:0000313|EMBL:KDR87641.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_20
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20510..21181)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003613D31
Uncharacterized protein {ECO:0000313|EMBL:EAP77752.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
YodA superfamily protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_21
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21306..22928)
DNA (1623bp) protein (541aa)
ABC transporter nucleotide binding/ATPase protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JRN0_AGRVS
ABC transporter ATPase
Glycosyl transferase family 1 {ECO:0000313|EMBL:KGE83064.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCNpilot_expt_1000_bf_scaffold_1220_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23219..24202
DNA (984bp) protein (328aa)
ABC transporter, substrate binding protein (Sulfate) n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFN6_RHIRD
Sulfate-binding protein {ECO:0000313|EMBL:AHK45902.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
sulfate ABC transporter sulfate-binding protein; K02048 sulfate transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1220_curated_23
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24469..25290
DNA (822bp) protein (274aa)
Sulfate ABC transporter, permease protein CysT n=1 Tax=Rhizobium sp. CF080 RepID=J2TNF2_9RHIZ
Sulfate ABC transporter, inner membrane subunit CysT {ECO:0000313|EMBL:EUB97924.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ABC transporter permease; K02046 sulfate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1220_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26392..26544
DNA (153bp) protein (51aa)
Sulfate-transporting ATPase {ECO:0000256|SAAS:SAAS00085229}; EC=3.6.3.25 {ECO:0000256|SAAS:SAAS00085229};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Sulfate/thiosulfate import ATP-binding protein CysA 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EQS2_9RHIZ
cysA2; sulfate/thiosulfate ABC transporter, ATP-binding component
Displaying 24 items

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