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SCNpilot_expt_1000_bf_scaffold_1223_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1223_curated_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..274
DNA (273bp) protein (91aa)
Putative metalloprotease n=1 Tax=Rhizobium sp. CF080 RepID=J2JMP1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB96470.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
zinc protease; K07054
SCNpilot_expt_1000_bf_scaffold_1223_curated_2
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(448..1440)
DNA (993bp) protein (331aa)
aldo/keto reductase n=1 Tax=Rhizobium meliloti RepID=UPI000369AB6F
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein {ECO:0000313|EMBL:EJJ25877.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_1223_curated_3
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1556..2473
DNA (918bp) protein (306aa)
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CDM58518.1}; EC=4.2.1.1 {ECO:0000313|EMBL:CDM58518.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003723D36
transcriptional regulator, LysR family
SCNpilot_expt_1000_bf_scaffold_1223_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2619..3866
DNA (1248bp) protein (416aa)
Tetracycline resistance protein, class C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY44_9RHIZ
Tetracycline resistance protein, class C {ECO:0000313|EMBL:EYR79069.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tetA; tetracycline resistance protein, class C
SCNpilot_expt_1000_bf_scaffold_1223_curated_5
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4007..5410
DNA (1404bp) protein (468aa)
Putative efflux protein, MATE family n=1 Tax=Rhizobium sp. CF122 RepID=J2IMW6_9RHIZ
Putative multidrug resistance protein norM Multidrug-efflux transporter {ECO:0000313|EMBL:CDM58516.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
multidrug efflux protein; K03327 multidrug resistance protein, MATE family
SCNpilot_expt_1000_bf_scaffold_1223_curated_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5448..6653)
DNA (1206bp) protein (402aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J745_AGRRK
SCNpilot_expt_1000_bf_scaffold_1223_curated_7
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6973..7422
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QFV3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF59971.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein; K09117 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1223_curated_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7756..9816
DNA (2061bp) protein (687aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
DNA primase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKC0_RHITR
DNA primase
SCNpilot_expt_1000_bf_scaffold_1223_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9898..11760
DNA (1863bp) protein (621aa)
dnaG; ATP-dependent DNA helicase RecQ (EC:3.6.4.12)
ATP-dependent DNA helicase RecQ n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C2U9_RHILT
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EJC77167.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1223_curated_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11877..13808
DNA (1932bp) protein (644aa)
glycosyl transferase n=1 Tax=Rhizobium mongolense RepID=UPI0003B37A55
Transferase domain-containing protein {ECO:0000313|EMBL:AJD40087.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
transferase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1223_curated_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13920..15107
DNA (1188bp) protein (396aa)
kbl; 2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G5K5_RHIML
SCNpilot_expt_1000_bf_scaffold_1223_curated_12
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15146..16183
DNA (1038bp) protein (346aa)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
tdh; L-threonine 3-dehydrogenase; K00060 threonine 3-dehydrogenase [EC:1.1.1.103]
L-threonine 3-dehydrogenase n=1 Tax=Rhizobium sp. CF122 RepID=J2RX87_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1223_curated_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16180..16539
DNA (360bp) protein (120aa)
Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3PUI3_RHIE6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGE56813.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_1223_curated_14
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16965..18359
DNA (1395bp) protein (465aa)
RNA polymerase sigma factor RpoD n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HGD9_9RHIZ
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
RNA polymerase sigma factor RpoD
Displaying 14 items

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