ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3605_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3605_curated_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

985..1671
DNA (687bp) protein (229aa)
Phosphoribosyltransferase n=2 Tax=Rhizobium meliloti RepID=F6E8W4_SINMK
Adenine/guanine phosphoribosyltransferase-related PRPP-binding protein
Uncharacterized protein {ECO:0000313|EMBL:AEH83642.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2275..2967
DNA (693bp) protein (231aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CRL3_RHILT
diguanylate cyclase
GGDEF domain-containing protein {ECO:0000313|EMBL:AJC77761.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3061..3432
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X779_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL51735.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_4
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3429..3941
DNA (513bp) protein (171aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=K0PPS5_RHIML
hypothetical protein
Conserved hypothetical membrane-anchored protein {ECO:0000313|EMBL:CAC49107.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3945..5369)
DNA (1425bp) protein (475aa)
Cro/Cl family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00037AF01E
Transcriptional regulator, XRE family {ECO:0000313|EMBL:AHK45943.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
XRE family transcriptional regulator; K07110
SCNpilot_expt_1000_bf_scaffold_3605_curated_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5819..6658)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V788_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN89690.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_7
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6738..7046
DNA (309bp) protein (103aa)
PCCB; propionyl-CoA carboxylase subunit beta (EC:6.4.1.3)
Acetyl-CoA carboxylase, carboxyltransferase component (Subunits alpha and beta) n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4ILF8_RHIML
Propionyl-CoA carboxylase {ECO:0000313|EMBL:EHK76664.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_8
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7097..7471
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 IPR1_9RHIZ">RepID=J2IPR1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN56417.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3605_curated_9
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7476..7850
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QYZ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF60807.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3605_curated_10
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8274..9815
DNA (1542bp) protein (514aa)
Propionyl-CoA carboxylase alpha chain, mitochondrial {ECO:0000313|EMBL:CCF21659.1}; EC=6.4.1.3 {ECO:0000313|EMBL:CCF21659.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
carbamoyl-phosphate synthase L chain ATP-binding; K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
Propionyl-CoA carboxylase alpha chain, mitochondrial n=1 Tax=Rhizobium sp. RepID=L0NLA3_RHISP
SCNpilot_expt_1000_bf_scaffold_3605_curated_11
RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10378..10620)
DNA (243bp) protein (81aa)
id=3610420 bin=GWC2_Deltaproteobacteria_66_88 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
Tax=RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated
SCNpilot_expt_1000_bf_scaffold_3605_curated_12
Amphimedon queenslandica, Amphimedon, Haplosclerida, Demospongiae, Porifera, Metazoa

Not on your lists

comp(10970..11821)
DNA (852bp) protein (284aa)
Uncharacterized protein (Fragment) n=1 Tax=Amphimedon queenslandica RepID=I1EHP5_AMPQE
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:PAC:15703143}; TaxID=400682 species="Eukaryota; Metazoa; Porifera; Demospongiae; Haplosclerida; Niphatidae; Amphimedon.;" source="Amphimedon queenslandica (Sponge).;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12573..14519
DNA (1947bp) protein (649aa)
4-hydroxyphenylpyruvate dioxygenase protein {ECO:0000313|EMBL:AJC83857.1}; EC=1.13.11.27 {ECO:0000313|EMBL:AJC83857.1};; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
putative 4-hydroxyphenylpyruvate dioxygenase protein (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036FB0FE
SCNpilot_expt_1000_bf_scaffold_3605_curated_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14516..15157
DNA (642bp) protein (214aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVX6_RHITR
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGB74861.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15382..16254
DNA (873bp) protein (291aa)
Shikimate 5-dehydrogenase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UEM9_9RHIZ
Shikimate 5-dehydrogenase {ECO:0000313|EMBL:ENN88618.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
shikimate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3605_curated_16
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16356..17408
DNA (1053bp) protein (351aa)
Secreted sugar-binding protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FK54_PELBH
Secreted sugar-binding protein {ECO:0000313|EMBL:EAU44551.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
monosaccharide ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3605_curated_17
unknown

Not on your lists

comp(17489..17776)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3605_curated_18
unknown

Not on your lists

comp(18032..18157)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3605_curated_19
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19098..19916
DNA (819bp) protein (273aa)
ribose ABC transporter permease n=1 Tax=Rhodococcus opacus RepID=UPI00029CD4C5
Putative ABC transporter permease protein yphD {ECO:0000313|EMBL:AHK34258.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
branched-chain amino acid transporter permease
SCNpilot_expt_1000_bf_scaffold_3605_curated_20
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19913..20887
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Rhodococcus sp. 29MFTsu3.1 RepID=UPI0003788797
Ribose transport system permease protein rbsC {ECO:0000313|EMBL:AHK34257.1}; TaxID=543736 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus PD630.;"
monosaccharide ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_3605_curated_21
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20898..21836
DNA (939bp) protein (313aa)
Putative cyclase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T9H8_9BRAD
Cyclase {ECO:0000313|EMBL:KJB94517.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
cyclase
SCNpilot_expt_1000_bf_scaffold_3605_curated_22
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21837..22760)
DNA (924bp) protein (308aa)
HTH-type transcriptional regulator pcaQ Pca operon transcriptional activator n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AET8_RHIFH
pcaQ; HTH-type transcriptional regulator pcaQ Pca operon transcriptional activator; K02623 LysR family transcriptional regulator, pca operon transcriptional activator
LysR family transcriptional regulator PcaQ {ECO:0000313|EMBL:CCE99570.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_23
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22848..23636
DNA (789bp) protein (263aa)
3-oxoadipate enol-lactonase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000372870C
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:EPE94492.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
3-oxoadipate enol-lactonase
SCNpilot_expt_1000_bf_scaffold_3605_curated_24
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23638..24045
DNA (408bp) protein (136aa)
4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ABG63442.1}; EC=4.1.1.44 {ECO:0000313|EMBL:ABG63442.1};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
4-carboxymuconolactone decarboxylase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GN3_MESSB
SCNpilot_expt_1000_bf_scaffold_3605_curated_25
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24045..24785
DNA (741bp) protein (247aa)
pcaH; protocatechuate 3,4-dioxygenase beta subunit; K00449 protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase beta subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K2N1_AGRVS
Protocatechuate 3,4-dioxygenase beta subunit {ECO:0000313|EMBL:ACM39129.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_26
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24787..25410
DNA (624bp) protein (208aa)
pcaG; protocatechuate 3,4-dioxygenase alpha subunit; K00448 protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3]
Protocatechuate 3,4-dioxygenase alpha chain n=1 Tax=Rhizobium sp. RepID=L0NK36_RHISP
Protocatechuate 3,4-dioxygenase {ECO:0000313|EMBL:KGE02117.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_3605_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25433..26497
DNA (1065bp) protein (355aa)
3-carboxy-cis,cis-muconate cycloisomerase PcaB {ECO:0000313|EMBL:EYR83631.1}; EC=5.5.1.2 {ECO:0000313|EMBL:EYR83631.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
pcaB; 3-carboxy-cis,cis-muconate cycloisomerase; K01857 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
3-carboxy-cis,cis-muconate cycloisomerase PcaB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWR8_9RHIZ
Displaying 27 items

View Taxonomy