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SCNpilot_expt_1000_bf_scaffold_1530_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1530_curated_1
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..878
DNA (876bp) protein (292aa)
transketolase domain-containing protein; K00615 transketolase [EC:2.2.1.1]
transketolase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000364E1D7
Transketolase {ECO:0000313|EMBL:KKC32238.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_1530_curated_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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881..1882
DNA (1002bp) protein (334aa)
transketolase central region; K00615 transketolase [EC:2.2.1.1]
transketolase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037A39E4
Transketolase {ECO:0000313|EMBL:KKC32239.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_1530_curated_3
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1882..3006
DNA (1125bp) protein (375aa)
RuBisCO-like protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39]
Ribulose bisphosphate carboxylase large chain n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UUG5_9RHIZ
RuBisCO {ECO:0000313|EMBL:KKC32240.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_1530_curated_4
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3123..3521
DNA (399bp) protein (133aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U7V5_SINMW
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ABR59735.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_1530_curated_5
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3566..3805)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003696C48
Uncharacterized protein {ECO:0000313|EMBL:CDM62572.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3866..4135)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VUC1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AJD43002.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_7
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4259..4426
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6B7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN57827.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_8
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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4487..4981
DNA (495bp) protein (165aa)
General stress protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JRD8_HYPDA
General stress protein {ECO:0000313|EMBL:KIJ70970.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
general stress protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5058..8198)
DNA (3141bp) protein (1047aa)
Acr/RND family transmembrane transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI00037C9C50
Cation/multidrug efflux pump {ECO:0000313|EMBL:EJC68215.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
Acr/RND family transmembrane transporter
SCNpilot_expt_1000_bf_scaffold_1530_curated_10
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8225..9349)
DNA (1125bp) protein (375aa)
Hemolysin secretion protein D n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FQV9_9RHIZ
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGB47551.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_1530_curated_11
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9420..10022)
DNA (603bp) protein (201aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HAJ2_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:CDM59366.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
tetr1; HTH-type transcriptional regulator yhgD
SCNpilot_expt_1000_bf_scaffold_1530_curated_12

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comp(10185..11390)
DNA (1206bp) protein (402aa)
Bcr/CflA family drug resistance transporter protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S385_RHIET
AAA domain protein {ECO:0000313|EMBL:AIA13136.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Bcr/CflA family drug resistance transporter protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11624..12277
DNA (654bp) protein (218aa)
TetR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00036F203B
Transcriptional regulator TetR family {ECO:0000313|EMBL:KEC71126.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
transcriptional regulator TetR family
SCNpilot_expt_1000_bf_scaffold_1530_curated_14
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12387..12740
DNA (354bp) protein (118aa)
RNA signal recognition particle 4.5S RNA n=1 Tax=Rhizobium giardinii RepID=UPI000380062A
RNA signal recognition particle 4.5S RNA {ECO:0000313|EMBL:KGE01020.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_15
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12737..13864)
DNA (1128bp) protein (376aa)
cyclopropane-fatty-acyl-phospholipid synthase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:ABR62297.1}; EC=2.1.1.79 {ECO:0000313|EMBL:ABR62297.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UF67_SINMW
SCNpilot_expt_1000_bf_scaffold_1530_curated_16
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14795..15151)
DNA (357bp) protein (119aa)
UPI0003D024CD related cluster n=1 Tax=unknown RepID=UPI0003D024CD
Cupin {ECO:0000313|EMBL:ESZ28557.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein; K06995
SCNpilot_expt_1000_bf_scaffold_1530_curated_17
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15174..16571)
DNA (1398bp) protein (466aa)
UPI0003D03F4F related cluster n=1 Tax=unknown RepID=UPI0003D03F4F
FAD-dependent oxidoreductase {ECO:0000313|EMBL:ESZ28556.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
FAD dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1530_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17008..17277
DNA (270bp) protein (90aa)
Peptidase {ECO:0000313|EMBL:EYR77361.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1530_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17318..18448)
DNA (1131bp) protein (377aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8B8_9RHIZ
histidine kinase
SCNpilot_expt_1000_bf_scaffold_1530_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18632..19297)
DNA (666bp) protein (222aa)
Transcriptional regulatory protein QseB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER76_9RHIZ
Transcriptional regulatory protein QseB {ECO:0000313|EMBL:EYR77359.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA-binding response regulator in two-component regulatory system
SCNpilot_expt_1000_bf_scaffold_1530_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19298..19639)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036F8651
Peptidase {ECO:0000313|EMBL:EYR77360.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_22
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19779..20660
DNA (882bp) protein (294aa)
AlgE2 protein {ECO:0000313|EMBL:KIT14612.1}; EC=5.1.3.- {ECO:0000313|EMBL:KIT14612.1};; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia aquimarina.;"
Hemolysin-type calcium-binding region, RTX n=1 Tax=Roseovarius sp. TM1035 RepID=A6DYK6_9RHOB
hemolysin-type calcium-binding protein
SCNpilot_expt_1000_bf_scaffold_1530_curated_23
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21516..21650)
DNA (135bp) protein (45aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FCZ9_9RHIZ
Two component sensor histidine kinase protein
Displaying 23 items

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