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SCNpilot_expt_1000_bf_scaffold_2747_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2747_curated_1
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..461
DNA (459bp) protein (153aa)
Putative short-chain type dehydrogenase/reductase y4eL n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXH7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEC79128.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
putative short-chain type dehydrogenase/reductase y4eL
SCNpilot_expt_1000_bf_scaffold_2747_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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454..1194
DNA (741bp) protein (247aa)
Putative short-chain type dehydrogenase/reductase y4eK {ECO:0000313|EMBL:EYR79259.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR79259.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative short-chain type dehydrogenase/reductase y4eK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0P1_9RHIZ
putative short-chain type dehydrogenase/reductase y4eK
SCNpilot_expt_1000_bf_scaffold_2747_curated_3
unknown

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1270..1470
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2747_curated_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1474..2262
DNA (789bp) protein (263aa)
proC1; pyrroline-5-carboxylate reductase ProC (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase ProC {ECO:0000313|EMBL:AFL51153.1}; EC=1.5.1.2 {ECO:0000313|EMBL:AFL51153.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Pyrroline-5-carboxylate reductase ProC n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X5J7_RHIFR
SCNpilot_expt_1000_bf_scaffold_2747_curated_5
unknown

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2380..2562
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2747_curated_6
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3340..3765
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037692B2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR63188.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2747_curated_7
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3946..5409
DNA (1464bp) protein (488aa)
PAS sensor protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036AE28B
Diguanylate cyclase (GGDEF) domain-containing protein
PAS/PAC domain protein {ECO:0000313|EMBL:KIV66806.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_expt_1000_bf_scaffold_2747_curated_8
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5517..6539)
DNA (1023bp) protein (341aa)
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Rhizobium sp. CF122 RepID=J2IVI0_9RHIZ
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:EJL52743.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
luciferase family protein
SCNpilot_expt_1000_bf_scaffold_2747_curated_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6624..7280)
DNA (657bp) protein (219aa)
alpha/beta hydrolase n=1 Tax=Rhizobium meliloti RepID=UPI000316A24E
Uncharacterized protein {ECO:0000313|EMBL:EUB96016.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2747_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7496..8287
DNA (792bp) protein (264aa)
Putative amino acid uptake ABC transporter periplasmic solute-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NVZ5_9RHIZ
Putative amino acid uptake ABC transporter periplasmic solute-binding protein {ECO:0000313|EMBL:EKF41994.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
amino acid uptake ABC transporter substrate-binding protein precursor
SCNpilot_expt_1000_bf_scaffold_2747_curated_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8354..9598
DNA (1245bp) protein (415aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
FAD dependent oxidoreductase n=1 Tax=Nitratireductor indicus C115 RepID=K2NRJ2_9RHIZ
FAD dependent oxidoreductase {ECO:0000313|EMBL:EKF41990.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_2747_curated_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9632..10561
DNA (930bp) protein (310aa)
Transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NVY5_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EKF41989.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2747_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10658..11980
DNA (1323bp) protein (441aa)
ATPase P; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
ATPase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035CF47F
Copper-(Or silver)-translocating P-type ATPase {ECO:0000313|EMBL:EYR81630.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying 13 items

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