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SCNpilot_expt_1000_bf_scaffold_2760_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2760_curated_1
unknown

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1..123
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2760_curated_2
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(204..728)
DNA (525bp) protein (175aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
methionine-S-sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IM32_RHIML
SCNpilot_expt_1000_bf_scaffold_2760_curated_3
unknown

Not on your lists

884..1093
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2760_curated_4
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1285..2133)
DNA (849bp) protein (283aa)
UPI0003CF0249 related cluster n=1 Tax=unknown RepID=UPI0003CF0249
Metallo-beta-lactamase {ECO:0000313|EMBL:ESX90850.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2760_curated_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2360..2971)
DNA (612bp) protein (204aa)
Transglutaminase n=1 Tax=Nitratireductor indicus C115 RepID=K2NQN3_9RHIZ
Transglutaminase {ECO:0000313|EMBL:EKF41675.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
transglutaminase
SCNpilot_expt_1000_bf_scaffold_2760_curated_6
unknown

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3820..3996
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2760_curated_7
unknown

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4005..4223
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2760_curated_8
unknown

Not on your lists

4230..5180
DNA (951bp) protein (317aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2760_curated_9
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5105..5575)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00038222CA
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABL71582.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_2760_curated_10
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5825..6769)
DNA (945bp) protein (315aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EFB3_BRASB
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB10790.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
sugar (D-ribose) ABC transporter periplasmic binding protein; K02058 simple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2760_curated_11
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6848..7891)
DNA (1044bp) protein (348aa)
Sugar ABC transporter permease protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GGI7_9BRAD
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB83654.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
sugar ABC transporter permease; K10440 ribose transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2760_curated_12
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7888..8628)
DNA (741bp) protein (247aa)
sugar ABC transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
ABC-type sugar transport system, ATPase component n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YBS3_9BRAD
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB83655.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_2760_curated_13
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9101..9316)
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=U4PXL3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AJD44603.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2760_curated_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9632..10585)
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037FD150
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGS24363.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_2760_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10738..11625
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIX1_9RHIZ
Galactose mutarotase {ECO:0000313|EMBL:EYR78062.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2760_curated_16
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11827..12570)
DNA (744bp) protein (248aa)
ABC transporter, permease protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q983A4_RHILO
ABC transporter permease; K05846 osmoprotectant transport system permease protein rbh
Putative transporter subunit: permease component of ABC superfamily transporter {ECO:0000313|EMBL:CDX37093.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
SCNpilot_expt_1000_bf_scaffold_2760_curated_17
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12567..13490)
DNA (924bp) protein (308aa)
Fe(3+)-transporting ATPase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0G7I5_RHIML
Fe(3+)-transporting ATPase {ECO:0000313|EMBL:EHK74752.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
ABC-type proline/glycine betaine transport systems, ATPase component
SCNpilot_expt_1000_bf_scaffold_2760_curated_18
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13487..14653)
DNA (1167bp) protein (389aa)
ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI00037D3C1F
Putative transmembrane component of ABC transporter {ECO:0000313|EMBL:AHK45643.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC transporter permease; K05846 osmoprotectant transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2760_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14712..15623)
DNA (912bp) protein (304aa)
ABC transporter n=1 Tax=Rhizobium giardinii RepID=UPI0003699874
Putative solute-binding component of ABC transporter {ECO:0000313|EMBL:AHK45642.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
osmF; osmoprotectant uptake system substrate-binding protein OsmF
SCNpilot_expt_1000_bf_scaffold_2760_curated_20
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15766..16521)
DNA (756bp) protein (252aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HFH5_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EPE96835.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ymfC; HTH-type transcriptional regulator YmfC
SCNpilot_expt_1000_bf_scaffold_2760_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16737..17714
DNA (978bp) protein (326aa)
Phosphosugar isomerase n=8 Tax=Rhizobium meliloti RepID=F7X9S0_SINMM
Putative transport protein {ECO:0000313|EMBL:AHK47091.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
sugar isomerase (SIS)
SCNpilot_expt_1000_bf_scaffold_2760_curated_22
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17743..18594
DNA (852bp) protein (284aa)
kinase; K10710 fructoselysine 6-kinase [EC:2.7.1.-]
Putative kinase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KMM3_RHISN
Putative kinase {ECO:0000313|EMBL:AHK47090.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_2760_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18563..18796)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSY1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KDP73219.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
Displaying 23 items

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