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SCNpilot_expt_1000_bf_scaffold_5234_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5234_curated_1
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1105)
DNA (1104bp) protein (368aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
histidinol dehydrogenase; K00013 histidinol dehydrogenase [EC:1.1.1.23]
Histidinol dehydrogenase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XJF8_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5234_curated_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1151..2887)
DNA (1737bp) protein (579aa)
UPI0003D03187 related cluster n=1 Tax=unknown RepID=UPI0003D03187
ABC transporter permease {ECO:0000313|EMBL:ESZ19207.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
binding-protein-dependent transport systems inner membrane component; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5234_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3134..4249)
DNA (1116bp) protein (372aa)
Extracellular solute-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4L1_9RHIZ
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EYR82530.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_5234_curated_4
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4357..4941)
DNA (585bp) protein (195aa)
ABC transporter ATP-binding protein n=1 Tax=Ochrobactrum anthropi RepID=UPI0002896BA3
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXL06108.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
ABC transporter; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_5234_curated_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4996..5151)
DNA (156bp) protein (52aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
ABC transporter, ATP-binding protein n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FVV9_RHIML
ABC transporter,ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_5234_curated_6
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5605..5787)
DNA (183bp) protein (61aa)
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 1 {ECO:0000313|EMBL:AJD44521.1}; EC=1.1.1.127 {ECO:0000313|EMBL:AJD44521.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
2-deoxy-D-gluconate 3-dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B39F7E
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_5234_curated_7
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6628..6939
DNA (312bp) protein (104aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3]
histidine ammonia-lyase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F13B57
SCNpilot_expt_1000_bf_scaffold_5234_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6903..8168
DNA (1266bp) protein (422aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2N3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5234_curated_9
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8234..9985)
DNA (1752bp) protein (584aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1T019_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJJ24936.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
chemotaxis sensory transducer protein
SCNpilot_expt_1000_bf_scaffold_5234_curated_10
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10337..10663
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Rhizobium RepID=UPI0003659D36
Uncharacterized protein {ECO:0000313|EMBL:CDN56454.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5234_curated_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10664..11032
DNA (369bp) protein (123aa)
Response regulator protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5SMP0_RHIET
response regulator protein
Response regulator protein {ECO:0000313|EMBL:AGS23322.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_5234_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11029..13068
DNA (2040bp) protein (680aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
cheA; Chemotaxis protein histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
Chemotaxis protein histidine kinase-like protein n=1 Tax=Rhizobium sp. CF142 RepID=J2KVX6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5234_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13065..13556
DNA (492bp) protein (164aa)
Chemotaxis signal transduction protein n=1 Tax=Rhizobium sp. CF080 RepID=J2QDQ6_9RHIZ
Chemotaxis protein CheW {ECO:0000313|EMBL:KGD98276.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
cheW4; chemotaxis signal transduction protein; K03408 purine-binding chemotaxis protein CheW
SCNpilot_expt_1000_bf_scaffold_5234_curated_14
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14124..14456
DNA (333bp) protein (111aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HQZ6_9RHIZ
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EUC00835.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
Displaying 14 items

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