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SCNpilot_expt_1000_bf_scaffold_15348_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15348_curated_1
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..350)
DNA (348bp) protein (116aa)
Beta-ketoadipyl CoA thiolase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UTG3_9RHIZ
Beta-ketoadipyl CoA thiolase {ECO:0000313|EMBL:ENN85005.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
pcaF; beta-ketoadipyl CoA thiolase
SCNpilot_expt_1000_bf_scaffold_15348_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(343..471)
DNA (129bp) protein (43aa)
3-oxoadipate CoA-transferase subunit B {ECO:0000313|EMBL:AHK04278.1}; EC=2.8.3.6 {ECO:0000313|EMBL:AHK04278.1};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
3-oxoadipate CoA-transferase, beta subunit; K01032 3-oxoadipate CoA-transferase, beta subunit [EC:2.8.3.6]
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B) n=1 Tax=Rhizobium sp. RepID=L0NK31_RHISP
SCNpilot_expt_1000_bf_scaffold_15348_curated_3
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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718..1035
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9YBY3_KETVW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM42885.1}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain WSH-001).;"
SCNpilot_expt_1000_bf_scaffold_15348_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1026..1733)
DNA (708bp) protein (236aa)
pcaI; 3-oxoadipate CoA-transferase subunit alpha; K01031 3-oxoadipate CoA-transferase, alpha subunit [EC:2.8.3.6]
3-oxoadipate CoA-transferase protein, A subunit n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A343_RHIET
3-oxoadipate CoA-transferase {ECO:0000313|EMBL:KGE02507.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_15348_curated_5
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1855..2616
DNA (762bp) protein (254aa)
Beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UJN9_SINMW
beta-ketoadipate pathway transcription regulator; K02624 IclR family transcriptional regulator, pca regulon regulatory protein
Beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family {ECO:0000313|EMBL:ABR63869.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_15348_curated_6
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2661..3587)
DNA (927bp) protein (309aa)
Transcriptional regulator with cupin sensor, AraC family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F8Y8_9RHIZ
Transcriptional regulator with cupin sensor, AraC family {ECO:0000313|EMBL:EHS50753.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_15348_curated_7
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3817..4929
DNA (1113bp) protein (371aa)
Extracellular solute-binding protein family 1 n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F8Y9_9RHIZ
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:EHS50754.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
ABC transporter substrate-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_15348_curated_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5392..5913
DNA (522bp) protein (174aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F8Z0_9RHIZ
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EHS50755.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_15348_curated_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5913..6200
DNA (288bp) protein (96aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F8Z1_9RHIZ
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EHS50756.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
sugar ABC transporter; K02026 multiple sugar transport system permease protein
Displaying 9 items

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