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SCNpilot_expt_1000_bf_scaffold_3652_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3652_curated_1
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37..1956)
DNA (1920bp) protein (640aa)
Ferrichrome transport protein FhuB n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IA90_BORPD
fhuB; iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
Ferrichrome transport protein FhuB {ECO:0000313|EMBL:CAP44557.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_expt_1000_bf_scaffold_3652_curated_2
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1998..2744)
DNA (747bp) protein (249aa)
Periplasmic binding protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TK13_MESCW
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ADV10270.1}; Flags: Precursor;; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_expt_1000_bf_scaffold_3652_curated_3
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2891..5332)
DNA (2442bp) protein (814aa)
Putative ferric siderophore receptor n=1 Tax=Bordetella bronchiseptica D445 RepID=K4TN95_BORBO
Putative ferrichrome-iron receptor FhuA {ECO:0000313|EMBL:KDD50162.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
bfrF; ferric siderophore receptor
SCNpilot_expt_1000_bf_scaffold_3652_curated_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5446..5667)
DNA (222bp) protein (74aa)
FecR protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRU7_NITWN
FecR protein; K07165 transmembrane sensor
FecR protein {ECO:0000313|EMBL:ABA04994.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_3652_curated_5
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5677..6405)
DNA (729bp) protein (243aa)
FecR protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SRU7_NITWN
FecR protein; K07165 transmembrane sensor
FecR protein {ECO:0000313|EMBL:ABA04994.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_3652_curated_6
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6507..7010)
DNA (504bp) protein (168aa)
FecI-like protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B2W8_RHIRD
FecI-like protein {ECO:0000313|EMBL:EMS97341.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
FecI like protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_3652_curated_7
unknown

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comp(7211..7402)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3652_curated_8
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7509..9152)
DNA (1644bp) protein (548aa)
Acetate/butyrate--CoA ligase AAE7, peroxisomal {ECO:0000313|EMBL:CDX33553.1}; EC=6.2.1.1 {ECO:0000313|EMBL:CDX33553.1};; EC=6.2.1.2 {ECO:0000313|EMBL:CDX33553.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
acyl-CoA synthetase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
PREDICTED: acetate/butyrate--CoA ligase AAE7, peroxisomal-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C184DC
SCNpilot_expt_1000_bf_scaffold_3652_curated_9
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9493..10410)
DNA (918bp) protein (306aa)
Iron-siderophore ABC transporter n=1 Tax=Nitratireductor indicus C115 RepID=K2PN96_9RHIZ
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDP76767.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3652_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10488..11390)
DNA (903bp) protein (301aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETP0_9RHIZ
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EYR78139.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC-type DNA-binding domain-containing protein
SCNpilot_expt_1000_bf_scaffold_3652_curated_11
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11486..13768
DNA (2283bp) protein (761aa)
TonB-dependent siderophore receptor n=1 Tax=Rhizobium sp. CF080 RepID=J2IVT2_9RHIZ
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EUB99256.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
TonB-dependent siderophore receptor
SCNpilot_expt_1000_bf_scaffold_3652_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13778..15559
DNA (1782bp) protein (594aa)
Enterochelin esterase Fes n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRU1_9RHIZ
Enterochelin esterase Fes {ECO:0000313|EMBL:EYR78137.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
esterase
SCNpilot_expt_1000_bf_scaffold_3652_curated_13
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15695..16891)
DNA (1197bp) protein (399aa)
TonB-dependent receptor n=1 Tax=Rhizobium sp. RepID=L0NMZ9_RHISP
TonB-dependent receptor {ECO:0000313|EMBL:CCF22166.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. NT-26.;"
Vitamin B12 transporter btuB Cobalamin receptor; Outer membrane cobalamin translocator; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_3652_curated_14
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17521..18033
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NM97_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF22165.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. NT-26.;"
SCNpilot_expt_1000_bf_scaffold_3652_curated_15
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18136..19113)
DNA (978bp) protein (326aa)
Putative iron transport regulator transmembrane protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A5Y4_RHIFH
Uncharacterized protein {ECO:0000313|EMBL:KDP76492.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
fecR; putative iron transport regulator transmembrane protein
SCNpilot_expt_1000_bf_scaffold_3652_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19225..19797)
DNA (573bp) protein (191aa)
RNA polymerase sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWB3_9RHIZ
RNA polymerase sigma factor {ECO:0000313|EMBL:EYR78140.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_3652_curated_17
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20359..21231
DNA (873bp) protein (291aa)
aguA2; agmatine deiminase AguA (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12]
Agmatine deiminase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EJ34_9RHOB
Agmatine deiminase {ECO:0000313|EMBL:ESW60147.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
SCNpilot_expt_1000_bf_scaffold_3652_curated_18
unknown

Not on your lists

comp(21123..22502)
DNA (1380bp) protein (460aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3652_curated_19
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22760..23221
DNA (462bp) protein (154aa)
Amidase {ECO:0000313|EMBL:ESW60146.1}; EC=3.5.1.4 {ECO:0000313|EMBL:ESW60146.1};; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
amdA2; amidase AmdA (EC:3.5.1.4)
Amidase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGA7_9RHOB
SCNpilot_expt_1000_bf_scaffold_3652_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23500..27192)
DNA (3693bp) protein (1231aa)
L-proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:EYR78620.1}; EC=1.2.1.88 {ECO:0000313|EMBL:EYR78620.1};; EC=1.5.5.2 {ECO:0000313|EMBL:EYR78620.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putA; bifunctional PutA protein; K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
Bifunctional PutA protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AA08_RHIFH
SCNpilot_expt_1000_bf_scaffold_3652_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27351..27824
DNA (474bp) protein (158aa)
Proline dehydrogenase transcriptional activator PutR n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LWE3_RHITR
Transcriptional regulator {ECO:0000313|EMBL:EYR78619.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putR; proline dehydrogenase transcriptional activator PutR
SCNpilot_expt_1000_bf_scaffold_3652_curated_22
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27848..28759)
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodobacter sp. SW2 RepID=C8S537_9RHOB
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEW23902.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
oxyR; LysR family transcriptional regulator; K04761 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator rbh
SCNpilot_expt_1000_bf_scaffold_3652_curated_23
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28914..30650
DNA (1737bp) protein (579aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Catalase-peroxidase; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
catalase (EC:1.11.1.6); K03782 catalase-peroxidase [EC:1.11.1.21]
catalase-peroxidase n=1 Tax=Rhizobium radiobacter RepID=UPI0003716709
SCNpilot_expt_1000_bf_scaffold_3652_curated_24
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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30631..31095
DNA (465bp) protein (155aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
Catalase / Peroxidase (EC:1.11.1.6 1.11.1.7)
Catalase-peroxidase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VK83_9PROT
SCNpilot_expt_1000_bf_scaffold_3652_curated_25
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(31140..31976)
DNA (837bp) protein (279aa)
DNA topoisomerase; K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003735774
DNA topoisomerase {ECO:0000313|EMBL:CDM62362.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Displaying 25 items

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