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SCNpilot_expt_1000_bf_scaffold_2311_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2311_curated_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..431)
DNA (429bp) protein (143aa)
NADH-quinone oxidoreductase subunit m n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHA1_RHITR
nuoM; NADH-quinone oxidoreductase subunit m
NADH-quinone oxidoreductase subunit m {ECO:0000313|EMBL:AGB70793.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(431..2425)
DNA (1995bp) protein (665aa)
NADH-quinone oxidoreductase subunit l n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHR7_RHITR
nuoL; NADH-quinone oxidoreductase subunit l
NADH-quinone oxidoreductase subunit l {ECO:0000313|EMBL:AGB70792.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_3
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2433..2741)
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
NADH-quinone oxidoreductase subunit K n=3 Tax=Rhizobium/Agrobacterium group RepID=B9JD54_AGRRK
nuoK; NADH-quinone oxidoreductase subunit k
SCNpilot_expt_1000_bf_scaffold_2311_curated_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2773..3165)
DNA (393bp) protein (131aa)
NADH-quinone oxidoreductase subunit j n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LL39_RHITR
nuoJ; NADH-quinone oxidoreductase subunit j
NADH-quinone oxidoreductase subunit j {ECO:0000313|EMBL:AGB70790.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3539..3751)
DNA (213bp) protein (71aa)
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nuoI; NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit I n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PC84_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2311_curated_6
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4070..5113)
DNA (1044bp) protein (348aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
nuoH; NADH dehydrogenase subunit H; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit H n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QTN7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2311_curated_7
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5125..5694)
DNA (570bp) protein (190aa)
NADH dehydrogenase subunit G; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH-quinone oxidoreductase, chain G n=1 Tax=Rhizobium sp. CF142 RepID=J2KZA7_9RHIZ
NADH-quinone oxidoreductase, chain G {ECO:0000313|EMBL:EJJ26094.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_8
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5982..7205)
DNA (1224bp) protein (408aa)
NADH-quinone oxidoreductase chain 3 {ECO:0000313|EMBL:CCM75218.1}; EC=1.6.99.5 {ECO:0000313|EMBL:CCM75218.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
nuoG1; NADH dehydrogenase subunit G (EC:1.6.5.3); K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH-quinone oxidoreductase chain 3 n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PMR7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2311_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7270..7983)
DNA (714bp) protein (238aa)
hypothetical protein; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
protein in NADH-ubiquinone oxidoreductase complex n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A072B
Uncharacterized protein {ECO:0000313|EMBL:KEC75162.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_10
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7989..9293)
DNA (1305bp) protein (435aa)
NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F) (NDH-1, chain F) {ECO:0000313|EMBL:CCF18994.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCF18994.1};; EC=1.6.99.5 {ECO:0000313|EMBL:CCF18994.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
nuoF; NADH dehydrogenase I subunit F; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH dehydrogenase n=1 Tax=Rhizobium giardinii RepID=UPI00037BF04E
SCNpilot_expt_1000_bf_scaffold_2311_curated_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9367..10488)
DNA (1122bp) protein (374aa)
NADH dehydrogenase subunit E {ECO:0000313|EMBL:EMS97889.1}; EC=1.6.5.3 {ECO:0000313|EMBL:EMS97889.1};; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
NADH dehydrogenase subunit E n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AAZ7_RHIRD
NADH-quinone oxidoreductase, E subunit
SCNpilot_expt_1000_bf_scaffold_2311_curated_12
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10506..10757)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEJ7_9RHIZ
Signal peptide protein {ECO:0000313|EMBL:KGD99575.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2311_curated_13
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10757..11947)
DNA (1191bp) protein (397aa)
nuoD1; NADH dehydrogenase subunit D; K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
NADH-quinone oxidoreductase subunit D n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD45_AGRRK
SCNpilot_expt_1000_bf_scaffold_2311_curated_14
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12012..12395)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000377B0C5
S23 ribosomal RNA-associated protein {ECO:0000313|EMBL:AIC26796.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
S23 ribosomal protein
SCNpilot_expt_1000_bf_scaffold_2311_curated_15
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12423..13025)
DNA (603bp) protein (201aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
NADH dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit C n=1 Tax=Rhizobium sp. CF142 RepID=J1SLL5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2311_curated_16
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13043..13624)
DNA (582bp) protein (194aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
nuoB1; NADH dehydrogenase subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit B n=1 Tax=Rhizobium sp. CF080 RepID=J3CKR5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2311_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13615..13980)
DNA (366bp) protein (122aa)
nuoA; NADH dehydrogenase I subunit A (EC:1.6.5.3); K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
NADH-quinone oxidoreductase subunit A n=2 Tax=Agrobacterium RepID=F0L2G0_AGRSH
SCNpilot_expt_1000_bf_scaffold_2311_curated_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15602..16165)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BS95_RHILV
Uncharacterized protein {ECO:0000313|EMBL:EJC69265.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2311_curated_19
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16368..17447)
DNA (1080bp) protein (360aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EYI4_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG49186.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_20
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17456..18109)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EYI5_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG49187.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_21
unknown

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comp(18232..18492)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2311_curated_22
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18571..19305)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RYZ7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW25954.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_23
Chondrus crispus, Chondrus, Gigartinales, Florideophyceae, Eukaryota

Not on your lists

comp(19327..20697)
DNA (1371bp) protein (457aa)
Stackhouse genomic scaffold, scaffold_160 n=1 Tax=Chondrus crispus RepID=R7QAP9_CHOCR
Stackhouse genomic scaffold, scaffold_160 {ECO:0000313|EMBL:CDF34471.1}; TaxID=2769 species="Eukaryota; Rhodophyta; Florideophyceae; Gigartinales; Gigartinaceae; Chondrus.;" source="Chondrus crispus (Carrageen Irish moss) (Polymorpha crispa).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2311_curated_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21179..21385
DNA (207bp) protein (69aa)
CsbD family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZNX4_RHILW
Uncharacterized protein {ECO:0000313|EMBL:EXL04012.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
CsbD family protein
SCNpilot_expt_1000_bf_scaffold_2311_curated_25
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21508..21867)
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM60651.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
SCNpilot_expt_1000_bf_scaffold_2311_curated_26
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22524..23351)
DNA (828bp) protein (276aa)
IS426 transposase n=1 Tax=Rhizobium sp. Pop5 RepID=K0VCK6_9RHIZ
IS426 transposase {ECO:0000313|EMBL:EJZ16716.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
insD; IS2 insertion element transposase InsAB'; CP4-44 prophage
SCNpilot_expt_1000_bf_scaffold_2311_curated_27
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23348..23737)
DNA (390bp) protein (130aa)
Transposase IS3/IS911 family protein (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0VC98_9RHIZ
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:EJZ16717.1}; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
IS2 insertion element repressor InsA; KpLE2 phage-like element
SCNpilot_expt_1000_bf_scaffold_2311_curated_28
unknown

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comp(23854..24051)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2311_curated_29
unknown

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comp(24818..25105)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2311_curated_30
unknown

Not on your lists

25348..25677
DNA (330bp) protein (110aa)

This feature has no annotations

Displaying items 1-30 of 44 in total

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