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SCNpilot_expt_1000_bf_scaffold_3536_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3536_curated_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25..219
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036210AE
Uncharacterized protein {ECO:0000313|EMBL:EJC69944.1}; Flags: Precursor;; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3536_curated_2
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

238..1050
DNA (813bp) protein (271aa)
Putative integral membrane protein n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IK95_RHIML
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:KGE79762.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
putative integral membrane protein
SCNpilot_expt_1000_bf_scaffold_3536_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1051..3315
DNA (2265bp) protein (755aa)
fixI; nitrogen fixation cation ATP-ase; K01529 [EC:3.6.1.-]
FixI2 E1-E2 type cation ATPase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003756C4F
Putative nitrogen fixation cation ATP-ase protein {ECO:0000313|EMBL:CAK06025.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_3536_curated_4
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3312..3470
DNA (159bp) protein (53aa)
cytochrome oxidase maturation protein Cbb3 n=1 Tax=Rhizobium gallicum RepID=UPI00037B2330
Cytochrome oxidase maturation protein Cbb3 {ECO:0000313|EMBL:KKC27197.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
cbb3-type cytochrome oxidase maturation protein
SCNpilot_expt_1000_bf_scaffold_3536_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3491..3841
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0VAM1_RHILV
Uncharacterized protein {ECO:0000313|EMBL:EJC69948.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_3536_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4526..5647
DNA (1122bp) protein (374aa)
Major facilitator superfamily protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3K6_9RHIZ
Major facilitator superfamily protein {ECO:0000313|EMBL:EYR81948.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
major facilitator superfamily MFS_1
SCNpilot_expt_1000_bf_scaffold_3536_curated_7
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5670..6242)
DNA (573bp) protein (191aa)
DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=1 Tax=Rhizobium sp. CF122 RepID=J2S0K9_9RHIZ
DNA polymerase III epsilon subunit-like 3'-5' exonuclease {ECO:0000313|EMBL:EJL58537.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCNpilot_expt_1000_bf_scaffold_3536_curated_8
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6641..7072)
DNA (432bp) protein (144aa)
C4-dicarboxylate transport protein n=1 Tax=Rhizobium sp. Pop5 RepID=K0VWZ7_9RHIZ
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
dctA; C4-dicarboxylate transport protein DctA
SCNpilot_expt_1000_bf_scaffold_3536_curated_9
unknown

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7088..7312
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3536_curated_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..8405
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EA1C8
Uncharacterized protein {ECO:0000313|EMBL:EKS36340.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3536_curated_11
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8492..9406
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QX85_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF60022.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3536_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9677..10123
DNA (447bp) protein (149aa)
Pseudoazurin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRZ5_9RHIZ
Pseudoazurin {ECO:0000313|EMBL:EYR78699.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bcp; Pseudoazurin
SCNpilot_expt_1000_bf_scaffold_3536_curated_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10613..11362
DNA (750bp) protein (250aa)
fabG; short chain dehydrogenase (EC:1.1.1.100)
short-chain dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000366CCE7
Uncharacterized protein {ECO:0000313|EMBL:EJC69087.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
SCNpilot_expt_1000_bf_scaffold_3536_curated_14
unknown

Not on your lists

11402..11551
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3536_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11560..12210)
DNA (651bp) protein (217aa)
Transcriptional regulator, Cro/CI family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFZ7_9RHIZ
Transcriptional regulator, Cro/CI family {ECO:0000313|EMBL:EYR79309.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DNA-binding protein
SCNpilot_expt_1000_bf_scaffold_3536_curated_16
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12417..12764
DNA (348bp) protein (116aa)
Ethanolamine utilization protein eutQ n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1I2Z9_PSEUO
Ethanolamine utilization protein EutQ {ECO:0000313|EMBL:KES24751.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
ethanolamine utilization protein EutQ
SCNpilot_expt_1000_bf_scaffold_3536_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12773..13468
DNA (696bp) protein (232aa)
NADH oxidase {ECO:0000313|EMBL:EYR79310.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR79310.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Oxidoreductase, FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4KD73_PSEF5
FAD/FMN-binding/pyridine nucleotide-disulfide oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3536_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13429..14721
DNA (1293bp) protein (431aa)
NADH oxidase {ECO:0000313|EMBL:EYR79310.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR79310.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Oxidoreductase, FMN-binding protein n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MC85_PSEPS
NADH:flavin oxidoreductase
SCNpilot_expt_1000_bf_scaffold_3536_curated_19
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14824..15963
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGW7_HYPSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB66809.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3536_curated_20
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16030..17073
DNA (1044bp) protein (348aa)
cysA; sulfate/thiosulfate import ATP-binding protein CysA (EC:3.6.3.25)
Sulfate/thiosulfate import ATP-binding protein CysA {ECO:0000313|EMBL:CCB66808.1}; EC=3.6.3.25 {ECO:0000313|EMBL:CCB66808.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Sulfate/thiosulfate import ATP-binding protein CysA n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGW6_HYPSM
SCNpilot_expt_1000_bf_scaffold_3536_curated_21
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17070..17978
DNA (909bp) protein (303aa)
Putative Binding-protein-dependent transport systems inner membrane component n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGW5_HYPSM
Binding-protein-dependent transport systems inner membrane component
Putative Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CCB66807.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3536_curated_22
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17971..18837
DNA (867bp) protein (289aa)
Putative Spermidine/putrescine ABC transporter permease protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGW4_HYPSM
Spermidine/putrescine ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
Putative Spermidine/putrescine ABC transporter permease protein {ECO:0000313|EMBL:CCB66806.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_3536_curated_23
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19083..21296
DNA (2214bp) protein (738aa)
Methyl-accepting chemotaxis protein n=1 Tax=Caulobacter sp. AP07 RepID=J2HBK5_9CAUL
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EJL32928.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
mcpC; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_3536_curated_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21365..21574)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLK3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62894.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Displaying 24 items

View Taxonomy