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SCNpilot_expt_1000_bf_scaffold_1566_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1566_curated_1
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1374)
DNA (1374bp) protein (458aa)
oligoendopeptidase; K08602 oligoendopeptidase F [EC:3.4.24.-]
oligoendopeptidase F n=1 Tax=Rhizobium gallicum RepID=UPI0003789057
Oligoendopeptidase PepF/M3 family protein {ECO:0000313|EMBL:AIC28927.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_2
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1623..3179
DNA (1557bp) protein (519aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Rhizobium sp. AP16 RepID=J2DAK3_9RHIZ
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EJK79722.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
transcriptional regulatory protein ZraR
SCNpilot_expt_1000_bf_scaffold_1566_curated_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3475..5343
DNA (1869bp) protein (623aa)
Uncharacterized protein n=2 Tax=Rhizobium RepID=Q1MBX7_RHIL3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK09555.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_4
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5455..5718)
DNA (264bp) protein (88aa)
UPF0335 protein Avi_3695 n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=Y3695_AGRVS
hypothetical protein
UPF0335 protein Avi_3695 {ECO:0000255|HAMAP-Rule:MF_00797}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5799..6104)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3CTJ6_9RHIZ
Alkaline phosphatase {ECO:0000313|EMBL:KGD92054.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1566_curated_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6101..6913)
DNA (813bp) protein (271aa)
Putative N-formylglutamate amidohydrolase n=1 Tax=Rhizobium sp. AP16 RepID=J2KX88_9RHIZ
Putative N-formylglutamate amidohydrolase {ECO:0000313|EMBL:GAJ94096.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
amidohydrolase
SCNpilot_expt_1000_bf_scaffold_1566_curated_7
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7054..7596
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JS26_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM37654.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7596..9035
DNA (1440bp) protein (480aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
pyk; pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Rhizobium sp. CF142 RepID=J1SN91_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1566_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9152..10963)
DNA (1812bp) protein (604aa)
Lactone-specific esterase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J9P4_AGRRK
lactone-specific esterase
Lactone-specific esterase protein {ECO:0000313|EMBL:ACM27645.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_10
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11078..11695)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H9Z1_9RHIZ
hypothetical protein
TPR repeat-containing protein RHE_CH03534.1; Flags: Precursor;; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_11
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11797..11922)
DNA (126bp) protein (42aa)
50S ribosomal protein L36 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PD10_9RHIZ
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
SCNpilot_expt_1000_bf_scaffold_1566_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12138..13181)
DNA (1044bp) protein (348aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agro
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
Phosphoribosylaminoimidazole carboxylase, PurK protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0V504_RHILV
SCNpilot_expt_1000_bf_scaffold_1566_curated_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13181..13681)
DNA (501bp) protein (167aa)
purE; N5-carboxyaminoimidazole ribonucleotide mutase PurE (EC:5.4.99.18)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" sourc
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Sinorhizobium medicae RepID=UPI0003762EC5
SCNpilot_expt_1000_bf_scaffold_1566_curated_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13701..13904)
DNA (204bp) protein (68aa)
Coiled-coil domain protein n=1 Tax=Rhizobium sp. CF142 RepID=J2ANZ4_9RHIZ
Coiled-coil domain protein {ECO:0000313|EMBL:EJJ24930.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1566_curated_15
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14137..14310
DNA (174bp) protein (58aa)
Uncharacterized protein n=9 Tax=Sinorhizobium RepID=A6UCX0_SINMW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR61500.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_16
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14489..14749)
DNA (261bp) protein (87aa)
Regulatory protein ArsR n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UCW9_SINMW
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ABR61499.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14824..15702)
DNA (879bp) protein (293aa)
TauE/SafE family permease protein n=2 Tax=Rhizobium etli RepID=S5SMP4_RHIET
transporter, permease; K07090
TauE/SafE family permease protein {ECO:0000313|EMBL:AGS23327.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15852..15989
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A5F7_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP27276.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_19
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16267..16845
DNA (579bp) protein (193aa)
thiamine-phosphate pyrophosphorylase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
thiamine-phosphate pyrophosphorylase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037DAB58
Thiamine-phosphate pyrophosphorylase protein {ECO:0000313|EMBL:EGE55998.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16853..17983
DNA (1131bp) protein (377aa)
Tetratricopeptide repeat-containing protein n=2 Tax=Rhizobium etli RepID=S5S0J7_RHIET
tetratricopeptide repeat-containing protein
Hypothetical conserved protein {ECO:0000313|EMBL:ABC92282.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_21
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18016..18321
DNA (306bp) protein (102aa)
UPI0003CF386D related cluster n=1 Tax=unknown RepID=UPI0003CF386D
Fe-S oxidoreductase {ECO:0000313|EMBL:ESY82095.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein; K06940
SCNpilot_expt_1000_bf_scaffold_1566_curated_22
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18550..19350
DNA (801bp) protein (267aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein n=1 Tax=Rhizobium sp. CF142 RepID=J2AP12_9RHIZ
Inositol monophosphatase/fructose-1,6-bisphosphatase family protein {ECO:0000313|EMBL:EJJ24950.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_1566_curated_23
unknown

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comp(19434..19607)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1566_curated_24
unknown

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20406..20510
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1566_curated_25
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20514..21545
DNA (1032bp) protein (344aa)
OmpA/MotB domain protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FC45_9RHIZ
OmpA/MotB domain protein {ECO:0000313|EMBL:EHS49545.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Putative flagellar motor protein MotB
SCNpilot_expt_1000_bf_scaffold_1566_curated_26
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21740..23539)
DNA (1800bp) protein (600aa)
ABC transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI000376B1AD
ABC transporter ATP-binding/permease protein {ECO:0000313|EMBL:AIC28871.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
ABC transporter ATP-binding/permease protein
SCNpilot_expt_1000_bf_scaffold_1566_curated_27
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23731..23952
DNA (222bp) protein (74aa)
50S ribosomal protein L31 n=2 Tax=Rhizobium RepID=J3BDP1_9RHIZ
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
rpmE; 50S ribosomal protein L31
SCNpilot_expt_1000_bf_scaffold_1566_curated_28
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24169..24684)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H968_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE95442.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein; K13592 regulator of CtrA degradation
SCNpilot_expt_1000_bf_scaffold_1566_curated_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25061..25252)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI00036F2620
Uncharacterized protein {ECO:0000313|EMBL:CDN93365.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1566_curated_30
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25249..26535)
DNA (1287bp) protein (429aa)
Major facilitator superfamily (MFS) transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LQE3_RHITR
major facilitator superfamily (MFS) transporter
Major facilitator superfamily (MFS) transporter {ECO:0000313|EMBL:AGB72339.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying items 1-30 of 36 in total

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