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SCNpilot_expt_1000_bf_scaffold_184_curated

Search features with annotation key words

Displaying items 1-30 of 262 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_184_curated_1
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(206..3484)
DNA (3279bp) protein (1093aa)
peptidase s41; K08676 tricorn protease [EC:3.4.21.-]
Peptidase S41 n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RW77_LEAB4
Peptidase S41 {ECO:0000313|EMBL:ADQ17112.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_1000_bf_scaffold_184_curated_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3703..4812)
DNA (1110bp) protein (370aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDT7_NIAKG
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
magnesium and cobalt transport protein CorA; K03284 magnesium transporter
SCNpilot_expt_1000_bf_scaffold_184_curated_3
Polaribacter sp. Hel1_85, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4841..5356)
DNA (516bp) protein (172aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1250005 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. Hel1_85.;"
RsgA; K02217 ferritin [EC:1.16.3.1]
ferritin n=1 Tax=Mesoflavibacter zeaxanthinifaciens RepID=UPI000255B10B
SCNpilot_expt_1000_bf_scaffold_184_curated_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5589..6185
DNA (597bp) protein (199aa)
Scaffold protein Nfu/NifU n=1 Tax=Niabella soli DSM 19437 RepID=H1NRT1_9SPHI
Thioredoxin {ECO:0000313|EMBL:AHF16030.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Scaffold protein Nfu/NifU
SCNpilot_expt_1000_bf_scaffold_184_curated_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6275..6859
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D5CAD
ATPase {ECO:0000313|EMBL:KIC96407.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
NAD metabolism ATPase/kinase-like protein
SCNpilot_expt_1000_bf_scaffold_184_curated_6
unknown

Not on your lists

comp(7105..7260)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_184_curated_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7278..9164
DNA (1887bp) protein (629aa)
TonB-dependent receptor plug n=1 Tax=Niabella soli DSM 19437 RepID=H1NNX2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17476.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
outer membrane cobalamin receptor protein
SCNpilot_expt_1000_bf_scaffold_184_curated_8
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9315..10178
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036CD8AB
AraC family transcriptional regulator {ECO:0000313|EMBL:AHM60845.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
transcriptional regulator with cupin sensor, AraC family
SCNpilot_expt_1000_bf_scaffold_184_curated_9
unknown

Not on your lists

comp(10138..10407)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_184_curated_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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10633..13419
DNA (2787bp) protein (929aa)
alpha-L-rhamnosidase; K05989 alpha-L-rhamnosidase [EC:3.2.1.40]
Alpha-L-rhamnosidase id=4798946 bin=GWC2_Planctomycetes_45_44 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
SCNpilot_expt_1000_bf_scaffold_184_curated_11
Paenibacillus stellifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13434..14180
DNA (747bp) protein (249aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Bacillus thuringiensis serovar andalousiensis BGSC 4AW1 RepID=C3GAG0_BACTU
Uncharacterized protein {ECO:0000313|EMBL:AIQ62069.1}; TaxID=169760 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus stellifer.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_184_curated_12
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14187..14813
DNA (627bp) protein (209aa)
cyclase family protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017446AF
cyclase family protein
Tax=RBG_16_Planctomycetes_64_12_curated
SCNpilot_expt_1000_bf_scaffold_184_curated_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15145..16164
DNA (1020bp) protein (340aa)
alcohol dehydrogenase GroES-like protein id=14627896 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase GroES-like protein
Tax=CSP1_6_Rokubacteria
SCNpilot_expt_1000_bf_scaffold_184_curated_14
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16175..17122
DNA (948bp) protein (316aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EEG72441.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EEG72441.1};; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
D-isomer specific 2-hydroxyacid dehydrogenase protein; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
4-phosphoerythronate dehydrogenase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5Q7_9CLOT
SCNpilot_expt_1000_bf_scaffold_184_curated_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17528..18286
DNA (759bp) protein (253aa)
metallophosphoesterase; K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
Metallophosphoesterase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMK6_NIAKG
UDP-2,3-diacylglucosamine hydrolase {ECO:0000313|EMBL:KIC96075.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_1000_bf_scaffold_184_curated_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18283..19116
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMK5_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO41815.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_184_curated_17
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19131..20207
DNA (1077bp) protein (359aa)
MscS Mechanosensitive ion channel n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMK4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC96077.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
mechanosensitive ion channel MscS; K16052 MscS family membrane protein YnaI
SCNpilot_expt_1000_bf_scaffold_184_curated_18
unknown

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comp(20280..20567)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_184_curated_19
Gillisia limnaea, Gillisia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(20564..21751)
DNA (1188bp) protein (396aa)
Transposase IS4 family protein n=1 Tax=Gillisia limnaea DSM 15749 RepID=H2BU01_9FLAO
Transposase IS4 family protein {ECO:0000313|EMBL:EHQ03815.1}; TaxID=865937 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Gillisia.;" source="Gillisia limnaea DSM 15749.;"
transposase IS4 family protein
SCNpilot_expt_1000_bf_scaffold_184_curated_20
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24492..24977
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK22_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:GAO44528.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein; K09776 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_184_curated_21
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25035..26183
DNA (1149bp) protein (383aa)
AAA ATPase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK21_NIAKG
ATPase AAA {ECO:0000313|EMBL:KIC95443.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
AAA ATPase
SCNpilot_expt_1000_bf_scaffold_184_curated_22
unknown

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26271..26438
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_184_curated_23
unknown

Not on your lists

26550..26735
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_184_curated_24
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27292..27981
DNA (690bp) protein (230aa)
Putative secreted protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WQI9_9BACT
Putative secreted protein {ECO:0000313|EMBL:EPR66388.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
metal-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_184_curated_25
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28423..29247
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037D9BB0
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:AEI47279.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_184_curated_26
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29265..32300
DNA (3036bp) protein (1012aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A3021
Putative cytochrome c {ECO:0000313|EMBL:EPR65539.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
membrane-bound dehydrogenase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_184_curated_27
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

32432..34276
DNA (1845bp) protein (615aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000377E43B
Uncharacterized protein {ECO:0000313|EMBL:EON76174.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_184_curated_28
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34590..35189
DNA (600bp) protein (200aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=3597302 bin=GWF2_Bacteroidetes_49_14 species=Dyadobacter fermentans genus=Dyadobacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=GWF2_Bacteroidetes_49_14_curated
SCNpilot_expt_1000_bf_scaffold_184_curated_29
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35284..36465
DNA (1182bp) protein (394aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niabella soli DSM 19437 RepID=H1NM03_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIC95908.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
anti-FecI sigma factor FecR
SCNpilot_expt_1000_bf_scaffold_184_curated_30
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36588..39932
DNA (3345bp) protein (1115aa)
TonB-denpendent receptor n=1 Tax=Spirosoma panaciterrae RepID=UPI000374E856
TonB-dependent receptor {ECO:0000313|EMBL:KIA94797.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
TonB-dependent receptor plug
Displaying items 1-30 of 262 in total

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