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SCNpilot_expt_1000_bf_scaffold_434_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_434_curated_1
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

606..1214
DNA (609bp) protein (203aa)
SAM-dependent methyltransferase n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JPV4_9BACT
SAM-dependent methyltransferase {ECO:0000313|EMBL:ELR69407.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
methyltransferase family protein
SCNpilot_expt_1000_bf_scaffold_434_curated_2
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1101..2492)
DNA (1392bp) protein (464aa)
Mate efflux family protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JKF9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EZH72712.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
multi antimicrobial extrusion protein MatE
SCNpilot_expt_1000_bf_scaffold_434_curated_3
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2533..4656)
DNA (2124bp) protein (708aa)
TonB-dependent receptor n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PTA1_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:AIM35242.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_434_curated_4
Algibacter lectus, Algibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4707..6152)
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JPG3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAL63731.1}; TaxID=221126 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Algibacter.;" source="Algibacter lectus.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_434_curated_5
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6163..7575)
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JMF8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR69403.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
multi-copper enzyme maturation ABC transporter permease component-like protein; K01992 ABC-2 type transport system permease protein
SCNpilot_expt_1000_bf_scaffold_434_curated_6
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7615..8799)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JMF3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR69398.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
lipoprotein
SCNpilot_expt_1000_bf_scaffold_434_curated_7
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8805..10949)
DNA (2145bp) protein (715aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003631961
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:ELR69397.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_434_curated_8
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10964..11680)
DNA (717bp) protein (239aa)
ABC transporter ATP-binding protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NL48_ELIME
Contig56, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76737.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
ABC transporter ATPase
SCNpilot_expt_1000_bf_scaffold_434_curated_9
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11680..12573)
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JKF0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EZH72705.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
SCNpilot_expt_1000_bf_scaffold_434_curated_10
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12570..13061)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JKS5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ELR69395.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_434_curated_11
unknown

Not on your lists

comp(13575..13901)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_434_curated_12
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14602..14937
DNA (336bp) protein (112aa)
Resolvase domain n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5S7_SPHS2
Resolvase domain
Resolvase domain {ECO:0000313|EMBL:ADZ80092.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_434_curated_13
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15158..15976
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAR4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91723.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein; K09134 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_434_curated_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15992..16213
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGC1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC94092.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_434_curated_15
unknown

Not on your lists

16726..17319
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_434_curated_16
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17685..18317)
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RTB7_LEAB4
two component transcriptional regulator, luxr family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADQ18655.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_1000_bf_scaffold_434_curated_17
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18381..20255)
DNA (1875bp) protein (625aa)
Histidine kinase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RTB8_LEAB4
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ADQ18656.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_expt_1000_bf_scaffold_434_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20631..21818)
DNA (1188bp) protein (396aa)
Metallophosphoesterase n=1 Tax=Niabella soli DSM 19437 RepID=H1NKH3_9SPHI
Purple acid phosphatase {ECO:0000313|EMBL:AHF16913.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
purple acid phosphatase rbh
SCNpilot_expt_1000_bf_scaffold_434_curated_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22026..23636)
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ50_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF16355.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_434_curated_20
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23747..24661)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003673CC1
Metallophosphoesterase {ECO:0000313|EMBL:KIA92013.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
metallophosphoesterase
SCNpilot_expt_1000_bf_scaffold_434_curated_21
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24735..26630)
DNA (1896bp) protein (632aa)
RagB/SusD domain-containing protein n=3 Tax=Elizabethkingia RepID=H0KRT1_9FLAO
Glycan metabolism protein {ECO:0000313|EMBL:KFF10105.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
RagB/SusD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_434_curated_22
Elizabethkingia sp. BM10, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26649..30140)
DNA (3492bp) protein (1164aa)
Collagen-binding protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NG49_ELIME
TonB-dependent Receptor Plug Domain protein {ECO:0000313|EMBL:AJW64531.1}; TaxID=722877 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia sp. BM10.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_434_curated_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30300..31418)
DNA (1119bp) protein (373aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TH53_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC90746.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
anti-FecI sigma factor FecR
SCNpilot_expt_1000_bf_scaffold_434_curated_24
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31498..32061)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036CD093
Uncharacterized protein {ECO:0000313|EMBL:KIC90796.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_434_curated_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(32240..33706)
DNA (1467bp) protein (489aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14]
glycyl-tRNA synthetease n=1 Tax=Segetibacter koreensis RepID=UPI0003661282
SCNpilot_expt_1000_bf_scaffold_434_curated_26
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33785..35065)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037F3015
Uncharacterized protein {ECO:0000313|EMBL:GAO41480.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein; K02004 putative ABC transport system permease protein
SCNpilot_expt_1000_bf_scaffold_434_curated_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(35183..36553)
DNA (1371bp) protein (457aa)
NADH dehydrogenase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRW1_NIAKG
SCNpilot_expt_1000_bf_scaffold_434_curated_28
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(36738..38219)
DNA (1482bp) protein (494aa)
proton-translocating NADH-quinone oxidoreductase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037A9C17
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_434_curated_29
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(38223..40115)
DNA (1893bp) protein (631aa)
NADH dehydrogenase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035D3EC4
NADH--quinone oxidoreductase subunit L {ECO:0000313|EMBL:GAO41483.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_434_curated_30
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(40161..40496)
DNA (336bp) protein (112aa)
NADH dehydrogenase subunit K; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NADH-quinone oxidoreductase subunit K n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TRV8_NIAKG
Displaying items 1-30 of 48 in total

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