ggKbase home page

SCNpilot_expt_1000_bf_scaffold_193_curated

Search features with annotation key words

Displaying items 1-30 of 230 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_193_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..1275
DNA (1275bp) protein (425aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase {ECO:0000313|EMBL:AEV99958.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEV99958.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPW4_NIAKG
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_193_curated_2
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1568..1990
DNA (423bp) protein (141aa)
L-rhamnose mutarotase {ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|SAAS:SAAS00169483};; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
L-rhamnose mutarotase; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037DA290
SCNpilot_expt_1000_bf_scaffold_193_curated_3
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2003..3277
DNA (1275bp) protein (425aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EC72_RUNSL
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AEI47603.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_4
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3404..4777
DNA (1374bp) protein (458aa)
Carbohydrate kinase, FGGY n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EC73_RUNSL
carbohydrate kinase, FGGY
Carbohydrate kinase, FGGY {ECO:0000313|EMBL:AEI47604.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_5
unknown

Not on your lists

comp(4808..5335)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000373F0C6
SCNpilot_expt_1000_bf_scaffold_193_curated_6
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5541..6314)
DNA (774bp) protein (258aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFG3_NIAKG
Putative two-component response regulator {ECO:0000313|EMBL:GAO42356.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
LytTR family two component transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_193_curated_7
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6295..8541)
DNA (2247bp) protein (749aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFG2_NIAKG
Putative two-component histidine kinase {ECO:0000313|EMBL:GAO42355.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
putative signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_193_curated_8
Mesotoga infera, Mesotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

8863..12069
DNA (3207bp) protein (1069aa)
Uncharacterized protein n=1 Tax=Mesotoga sp. PhosAc3 RepID=N1JRR0_9THEM
Uncharacterized protein {ECO:0000313|EMBL:CCU85026.1}; TaxID=1236046 species="Bacteria; Thermotogae; Kosmotogales; Kosmotogaceae; Mesotoga.;" source="Mesotoga infera.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_193_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12186..15107
DNA (2922bp) protein (974aa)
D-lactate dehydrogenase (Cytochrome) {ECO:0000313|EMBL:AEW03019.1}; EC=1.1.2.4 {ECO:0000313|EMBL:AEW03019.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TLE6_NIAKG
D-lactate dehydrogenase; K06911
SCNpilot_expt_1000_bf_scaffold_193_curated_10
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15126..15842
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 RepID=R9CPS2_ELIME
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:KFC22054.1}; TaxID=421072 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_193_curated_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15876..19655)
DNA (3780bp) protein (1260aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000375CF62
Putative two-component histidine kinase {ECO:0000313|EMBL:GAO43155.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_193_curated_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19652..20428)
DNA (777bp) protein (259aa)
MazG family protein; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
MazG family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T911_NIAKG
MazG family protein {ECO:0000313|EMBL:AEV96964.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20437..21807)
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003825E2D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96963.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21845..22705
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T824_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91334.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_193_curated_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22894..24528)
DNA (1635bp) protein (545aa)
carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003749ED0
Carboxyl-terminal protease {ECO:0000313|EMBL:KIC94141.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_1000_bf_scaffold_193_curated_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24549..25394
DNA (846bp) protein (282aa)
N-acetylglucosamine kinase-like protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NK04_9SPHI
ATPase {ECO:0000313|EMBL:AHF14059.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
N-acetylglucosamine kinase-like protein
SCNpilot_expt_1000_bf_scaffold_193_curated_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

25418..26236
DNA (819bp) protein (273aa)
murQ; N-acetylmuramic acid 6-phosphate etherase; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C4EF8
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_193_curated_18
unknown

Not on your lists

26297..26455
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_193_curated_19
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26408..27178)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000375823A
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACT92527.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_20
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27168..30719)
DNA (3552bp) protein (1184aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036A4E62
Putative two-component histidine kinase {ECO:0000313|EMBL:GAO41421.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
putative phytochrome sensor protein
SCNpilot_expt_1000_bf_scaffold_193_curated_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30801..32474)
DNA (1674bp) protein (558aa)
PHP domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T913_NIAKG
PHP domain-containing protein; K02347 DNA polymerase (family X)
PHP domain protein {ECO:0000313|EMBL:AEV96966.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_22
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(32710..32838)
DNA (129bp) protein (43aa)
Putative uncharacterized protein id=2227275 bin=GWA2_Elusi-like_A8_64_40 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusi-like_A8_64_40 organism_group=Elusimicrobia
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_193_curated_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(32920..33186)
DNA (267bp) protein (89aa)
50S ribosomal protein L27 n=1 Tax=Niabella aurantiaca RepID=UPI000374552F
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
50S ribosomal protein L27P; K02899 large subunit ribosomal protein L27
SCNpilot_expt_1000_bf_scaffold_193_curated_24
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


comp(33228..33530)
DNA (303bp) protein (101aa)
50S ribosomal protein L21 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T918_NIAKG
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_193_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33738..35171
DNA (1434bp) protein (478aa)
GH3 auxin-responsive promoter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T919_NIAKG
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:AEV96972.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_26
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

35177..36331
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinoph
1-deoxy-D-xylulose 5-phosphate reductoisomerase; K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T920_NIAKG
SCNpilot_expt_1000_bf_scaffold_193_curated_27
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36424..37800
DNA (1377bp) protein (459aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
peptidase M50; K11749 regulator of sigma E protease [EC:3.4.24.-]
Peptidase M50 id=2249454 bin=GWB2_Bacteroidetes_32_14 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
SCNpilot_expt_1000_bf_scaffold_193_curated_28
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38051..38443
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PV80_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU64673.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_193_curated_29

Not on your lists

comp(38445..39515)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Desulfovibrio fructosivorans JJ RepID=E1K250_DESFR
Marine sediment metagenome DNA, contig: S01H1_S00918 {ECO:0000313|EMBL:GAF93312.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_193_curated_30
Prevotella sp. CAG:485, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39527..42220)
DNA (2694bp) protein (898aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Prevotella sp. CAG:485 RepID=R7F497_9BACT
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:CDE09328.1}; TaxID=1262927 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:485.;"
hypothetical protein
Displaying items 1-30 of 230 in total

View Taxonomy