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SCNpilot_expt_1000_bf_scaffold_421_curated

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_421_curated_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..644)
DNA (642bp) protein (214aa)
RNA methylase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191]
Putative RNA methylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR65_CHIPD
Putative RNA methylase {ECO:0000313|EMBL:ACU64304.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_421_curated_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

806..1378
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003827B0B
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
protein grpE; K03687 molecular chaperone GrpE
SCNpilot_expt_1000_bf_scaffold_421_curated_3
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1431..2582
DNA (1152bp) protein (384aa)
Chaperone protein DnaJ n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR67_CHIPD
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
chaperone protein DnaJ; K03686 molecular chaperone DnaJ
SCNpilot_expt_1000_bf_scaffold_421_curated_4
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2584..3003)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8L4W0_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KHD04168.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_421_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3163..4350)
DNA (1188bp) protein (396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7W9_NIAKG
integral membrane sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_421_curated_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4409..5476
DNA (1068bp) protein (356aa)
Glycosyl transferase family 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7X0_NIAKG
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEV96908.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_421_curated_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5525..5728
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF11_CHIPD">RepID=C7PF11_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC93118.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_421_curated_8
unknown

Not on your lists

comp(6229..6420)
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_421_curated_9
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7405..8508)
DNA (1104bp) protein (368aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana nanhaiensis.;"
integral membrane sensor signal transduction histidine kinase
Y_Y_Y domain-containing protein,putative transcriptional regulator,GAF domain-containing protein id=2041397 bin=GWD2_Bacteroidetes_40_43 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
SCNpilot_expt_1000_bf_scaffold_421_curated_10
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8650..9666)
DNA (1017bp) protein (339aa)
Transcriptional regulator, AraC family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJJ5_NIAKG
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:GAO45559.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_421_curated_11
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10055..10492)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003651D84
Uncharacterized protein {ECO:0000313|EMBL:ETZ21843.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
xanthan lyase
SCNpilot_expt_1000_bf_scaffold_421_curated_12
unknown

Not on your lists

comp(10443..10706)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_421_curated_13
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10975..12333)
DNA (1359bp) protein (453aa)
Chitinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB77_9SPHI
Putative hydrolase {ECO:0000313|EMBL:GAO41353.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_421_curated_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12366..13952)
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB79_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:GAO41352.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
lipoprotein
SCNpilot_expt_1000_bf_scaffold_421_curated_15
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13970..17452)
DNA (3483bp) protein (1161aa)
Putative outer membrane protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB80_9SPHI
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO41351.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
TonB-dependent receptor plug
SCNpilot_expt_1000_bf_scaffold_421_curated_16
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17484..18491)
DNA (1008bp) protein (336aa)
Fe2+-dicitrate sensor, membrane component n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KVF4_SOLCM
Putative anti-sigma factor {ECO:0000313|EMBL:GAO41350.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Fe2+-dicitrate sensor, membrane protein
SCNpilot_expt_1000_bf_scaffold_421_curated_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18544..19125)
DNA (582bp) protein (194aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHF5_9SPHI
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO41349.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
sigma-70 family RNA polymerase sigma factor
SCNpilot_expt_1000_bf_scaffold_421_curated_18
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19160..20098)
DNA (939bp) protein (313aa)
Chitinase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EB78_9SPHI
Putative glycosidase {ECO:0000313|EMBL:GAO44515.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
glycoside hydrolase
SCNpilot_expt_1000_bf_scaffold_421_curated_19
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20640..23048
DNA (2409bp) protein (803aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003824F34
TonB-dependent receptor {ECO:0000313|EMBL:KGO92241.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_421_curated_20
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23251..24000
DNA (750bp) protein (250aa)
Transcriptional regulator, DeoR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8M4_NIAKG
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:AEW00196.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_421_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24022..27447
DNA (3426bp) protein (1142aa)
TonB-dependent receptor n=1 Tax=Pedobacter agri RepID=UPI000299D66F
TonB-dependent receptor {ECO:0000313|EMBL:AHF16810.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
TonB-dependent receptor plug
SCNpilot_expt_1000_bf_scaffold_421_curated_22
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27459..29291
DNA (1833bp) protein (611aa)
glycan metabolism protein RagB n=1 Tax=Pedobacter agri RepID=UPI000299D498
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACU06329.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_421_curated_23
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29365..30339)
DNA (975bp) protein (325aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EPR65683.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EPR65683.1};; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
UDP-glucose 4-epimerase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WNC3_9BACT
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_421_curated_24
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

30477..31502
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AD02A
Uncharacterized protein {ECO:0000313|EMBL:KFF15842.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_421_curated_25
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(31565..32983)
DNA (1419bp) protein (473aa)
amidohydrolase n=1 Tax=Eudoraea adriatica RepID=UPI00036A714B
hypothetical protein; K12941 aminobenzoyl-glutamate utilization protein B
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_421_curated_26
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33103..33798
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EB43_RUNSL
Uncharacterized protein {ECO:0000313|EMBL:GAO42543.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_421_curated_27
unknown

Not on your lists

33835..34314
DNA (480bp) protein (160aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_421_curated_28
unknown

Not on your lists

comp(34744..35619)
DNA (876bp) protein (292aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_421_curated_29
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

36144..36893
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037ADA85
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADB39163.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_expt_1000_bf_scaffold_421_curated_30
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36913..38196
DNA (1284bp) protein (428aa)
Acetyl-CoA hydrolase/transferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TET5_NIAKG
4-hydroxybutyrate CoA-transferase {ECO:0000313|EMBL:KIC95132.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
acetyl-CoA hydrolase/transferase
Displaying items 1-30 of 56 in total

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