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SCNpilot_expt_1000_bf_scaffold_2270_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2270_curated_1
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..369
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=J8VV10_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU11271.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2270_curated_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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479..829
DNA (351bp) protein (117aa)
DNA repair protein RadC n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKZ9_9SPHN
DNA repair protein RadC {ECO:0000313|EMBL:EJU11270.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
DNA repair protein RadC
SCNpilot_expt_1000_bf_scaffold_2270_curated_3
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(879..1076)
DNA (198bp) protein (66aa)
Heavy metal transport/detoxification protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SEI6_9SPHN
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:EJU11269.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
heavy metal transport/detoxification protein
SCNpilot_expt_1000_bf_scaffold_2270_curated_4
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1228..3768
DNA (2541bp) protein (847aa)
Heavy metal translocating P-type ATPase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VTA0_9SPHN
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EJU11268.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
heavy metal translocating P-type ATPase
SCNpilot_expt_1000_bf_scaffold_2270_curated_5
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3765..4259
DNA (495bp) protein (165aa)
MerR family transcriptional regulator (Fragment) n=2 Tax=Sphingomonadaceae RepID=J8VEN2_9SPHN
MerR family transcriptional regulator {ECO:0000313|EMBL:EJU11267.1}; Flags: Fragment;; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
MerR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2270_curated_6
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4433..4702)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VI35_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10270.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_2270_curated_7
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4811..5044
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VQE7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10268.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_2270_curated_8
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5159..6901
DNA (1743bp) protein (581aa)
Copper-binding protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HPA0_9SPHN
Copper-binding protein {ECO:0000313|EMBL:EQB01175.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
pcoA; CopA family copper-resistance protein
SCNpilot_expt_1000_bf_scaffold_2270_curated_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6898..7890
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036462A5
Copper resistance B {ECO:0000313|EMBL:KEZ17927.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
copper resistance B
SCNpilot_expt_1000_bf_scaffold_2270_curated_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7913..8365
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=K9CLA2_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72658.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2270_curated_11
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8431..10401
DNA (1971bp) protein (657aa)
Iron permease n=1 Tax=Sphingomonas sp. LH128 RepID=J8SA12_9SPHN
Iron permease {ECO:0000313|EMBL:EJU09709.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
iron permease FTR1; K07243 high-affinity iron transporter
SCNpilot_expt_1000_bf_scaffold_2270_curated_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10429..10647)
DNA (219bp) protein (73aa)
ABC transporter; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Sphingomonas sp. LH128 RepID=J8VGM2_9SPHN
ABC transporter {ECO:0000313|EMBL:EJU09710.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
Displaying 12 items

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