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SCNpilot_expt_1000_bf_scaffold_941_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_941_curated_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1606)
DNA (1605bp) protein (535aa)
cation transporter n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A18956
Cation transporter {ECO:0000313|EMBL:AJR26717.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
heavy metal efflux pump CzcA; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA
SCNpilot_expt_1000_bf_scaffold_941_curated_2
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1603..3087)
DNA (1485bp) protein (495aa)
RND transporter n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B5DF0B
RND transporter {ECO:0000313|EMBL:AJR25299.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
secretion protein HlyD; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
SCNpilot_expt_1000_bf_scaffold_941_curated_3
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3084..4316)
DNA (1233bp) protein (411aa)
transporter n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B44A14
Transporter {ECO:0000313|EMBL:AJR26800.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
outer membrane efflux protein
SCNpilot_expt_1000_bf_scaffold_941_curated_4
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4453..4725)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B32267
Uncharacterized protein {ECO:0000313|EMBL:AJR26481.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_941_curated_5
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4812..5165)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B7A1DF
Uncharacterized protein {ECO:0000313|EMBL:AJR25301.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_941_curated_6
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5219..5662)
DNA (444bp) protein (148aa)
metal-binding protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A90251
Metal-binding protein {ECO:0000313|EMBL:AJR26738.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_941_curated_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5731..6204)
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=D4YY94_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQB04535.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_8
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6263..7408)
DNA (1146bp) protein (382aa)
UPI0003D65338 related cluster n=1 Tax=unknown RepID=UPI0003D65338
Copper resistance protein CopB {ECO:0000313|EMBL:KFL46262.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
copper resistance protein CopB; K07233 copper resistance protein B
SCNpilot_expt_1000_bf_scaffold_941_curated_9
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7405..9384)
DNA (1980bp) protein (660aa)
UPI0003D5A74C related cluster n=1 Tax=unknown RepID=UPI0003D5A74C
Putative multicopper oxidase {ECO:0000313|EMBL:KHS45212.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
copper resistance protein CopA
SCNpilot_expt_1000_bf_scaffold_941_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9433..9996)
DNA (564bp) protein (188aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMI5_9SPHN
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAK67774.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9993..10433)
DNA (441bp) protein (147aa)
Heavy metal resistance protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMI6_9SPHN
heavy metal resistance protein
Heavy metal resistance protein {ECO:0000313|EMBL:BAK67775.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_12
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10430..10708)
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BADB
Uncharacterized protein {ECO:0000313|EMBL:EXS70509.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_941_curated_13
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10841..11227
DNA (387bp) protein (129aa)
copper resistance protein C n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB92
Copper resistance protein CopC {ECO:0000313|EMBL:EXS70510.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
copC; copper resistance protein CopC; K07156
SCNpilot_expt_1000_bf_scaffold_941_curated_14
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11228..12154
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0I391_9SPHN
Copper resistance protein CopD {ECO:0000313|EMBL:EXS70511.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
copper resistance protein CopD
SCNpilot_expt_1000_bf_scaffold_941_curated_15
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12221..14593
DNA (2373bp) protein (791aa)
Heavy metal translocating P-type ATPase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GQ22_SPHAL
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:ABF54250.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
heavy metal translocating P-type ATPase
SCNpilot_expt_1000_bf_scaffold_941_curated_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14590..14979
DNA (390bp) protein (130aa)
MerR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488E92
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ADG10284.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_941_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15002..15571)
DNA (570bp) protein (190aa)
Uncharacterized protein n=3 Tax=Sphingobium RepID=D4YY76_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK68684.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15792..16553
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D0M4_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72532.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
LuxR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_941_curated_19
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16636..17313
DNA (678bp) protein (226aa)
Autoinducer-binding domain protein n=5 Tax=Sphingomonadaceae RepID=F6F487_SPHCR
LuxR family transcriptional regulator
Autoinducer-binding domain protein {ECO:0000313|EMBL:AEG51746.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17388..17999
DNA (612bp) protein (204aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
N-acyl-L-homoserine lactone synthetase n=6 Tax=Sphingomonadaceae RepID=D4YY73_SPHJU
N-acyl-L-homoserine lactone synthase
SCNpilot_expt_1000_bf_scaffold_941_curated_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18011..18955
DNA (945bp) protein (315aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F485_SPHCR
Phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AEG51744.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_22
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19005..19346
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F484_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG51743.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_23
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19343..20008
DNA (666bp) protein (222aa)
Lytic transglycosylase catalytic n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F483_SPHCR
Lytic transglycosylase catalytic; K03194 type IV secretion system protein VirB1
Lytic transglycosylase catalytic {ECO:0000313|EMBL:AEG51742.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_24
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20005..20343
DNA (339bp) protein (113aa)
Conjugal transfer protein TrbC n=3 Tax=Sphingobium RepID=F6F482_SPHCR
virB2; type IV secretory pathway VirB2 component; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:AEG51741.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_25
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20340..20690
DNA (351bp) protein (117aa)
Type IV secretory pathway VirB3 family protein n=3 Tax=Sphingobium RepID=F6F481_SPHCR
virB3; type IV secretory pathway VirB3 component; K03198 type IV secretion system protein VirB3
Type IV secretory pathway VirB3 component {ECO:0000313|EMBL:EIM68960.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20683..23094
DNA (2412bp) protein (804aa)
Type IV secretory pathway VirB4 component n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IU18_9SPHN
virB4; type IV secretory pathway VirB4 component; K03199 type IV secretion system protein VirB4
Type IV secretory pathway VirB4 component {ECO:0000313|EMBL:BAK68693.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_27
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23098..23814
DNA (717bp) protein (239aa)
Type IV secretion system family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F479_SPHCR
type IV secretion system family protein; K03200 type IV secretion system protein VirB5
Type IV secretion system family protein {ECO:0000313|EMBL:AEG51738.1}; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_941_curated_28
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24038..24430
DNA (393bp) protein (131aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F478_SPHCR
TrbL/VirB6 plasmid conjugal transfer protein; K03201 type IV secretion system protein VirB6
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:AEG51737.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Displaying 28 items

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