ggKbase home page

SCNpilot_expt_1000_bf_scaffold_249_curated

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_249_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..227
DNA (225bp) protein (75aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
metK; S-adenosylmethionine synthase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthetase n=1 Tax=Sphingomonas elodea RepID=UPI000263131A
SCNpilot_expt_1000_bf_scaffold_249_curated_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

350..1312
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VZ31_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO53712.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_249_curated_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1470..2108
DNA (639bp) protein (213aa)
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UF10_9RHIZ
Glutathione S-transferase {ECO:0000313|EMBL:ENN88763.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2545..3255
DNA (711bp) protein (237aa)
trmB; tRNA (guanine-N(7)-)-methyltransferase; K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INM2_9SPHN
SCNpilot_expt_1000_bf_scaffold_249_curated_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3985..4797
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2D0C3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP66340.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_249_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4794..6125
DNA (1332bp) protein (444aa)
Terminase-like family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INM0_9SPHN
terminase-like family protein
Terminase-like family protein {ECO:0000313|EMBL:BAK67999.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6353..7060
DNA (708bp) protein (236aa)
LuxR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL9_9SPHN
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:BAK67998.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_8
unknown

Not on your lists

comp(6985..7815)
DNA (831bp) protein (277aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_249_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7835..8980
DNA (1146bp) protein (382aa)
Putative portal protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL8_9SPHN
putative portal protein
Putative portal protein {ECO:0000313|EMBL:BAK67997.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8971..9402
DNA (432bp) protein (144aa)
Putative prohead protease n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL7_9SPHN
putative prohead protease; K06904
Putative prohead protease {ECO:0000313|EMBL:BAK67996.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_11
unknown

Not on your lists

9468..9917
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_249_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9993..11132
DNA (1140bp) protein (380aa)
Putative major capsid protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL6_9SPHN
putative major capsid protein
Putative major capsid protein {ECO:0000313|EMBL:BAK67995.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_13
unknown

Not on your lists

comp(11057..11233)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_249_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11295..11834
DNA (540bp) protein (180aa)
Putative phage-related protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL5_9SPHN
putative phage-like protein
Putative phage-related protein {ECO:0000313|EMBL:BAK67994.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11831..12226
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67993.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12270..12677
DNA (408bp) protein (136aa)
Putative phage-related protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL3_9SPHN
putative phage-like protein
Putative phage-related protein {ECO:0000313|EMBL:BAK67992.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12674..12991
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67991.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12988..13191
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INL1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67990.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_19
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13184..13741
DNA (558bp) protein (186aa)
tail tape measure protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4629A
Uncharacterized protein {ECO:0000313|EMBL:EAT08230.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_249_curated_20
unknown

Not on your lists

comp(13920..14318)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_249_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14655..16985
DNA (2331bp) protein (777aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK9_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67988.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_249_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16982..17800
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67987.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17804..18217
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67986.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18222..20429
DNA (2208bp) protein (736aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67985.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20455..20952
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67984.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21151..22242
DNA (1092bp) protein (364aa)
OOP-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK4_9SPHN
OOP-family protein
OOP-family protein {ECO:0000313|EMBL:BAK67983.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22974..23720
DNA (747bp) protein (249aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK3_9SPHN
hypothetical protein; K06890
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK67982.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24174..24803)
DNA (630bp) protein (210aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase {ECO:0000313|EMBL:BAK67981.1}; EC=2.5.1.18 {ECO:0000313|EMBL:BAK67981.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glutathione S-transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK2_9SPHN
SCNpilot_expt_1000_bf_scaffold_249_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25003..25758)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK1_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67980.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_249_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25780..28110)
DNA (2331bp) protein (777aa)
ATP-dependent Clp protease ATP-binding subunit ClpA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2INK0_9SPHN
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:BAK67979.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
clpA; ATP-dependent Clp protease ATP-binding subunit ClpA; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
Displaying items 1-30 of 117 in total

View Taxonomy