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SCNpilot_expt_1000_bf_scaffold_880_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_880_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..184
DNA (183bp) protein (61aa)
antirepressor n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7C0
Antirestriction protein ArdC {ECO:0000313|EMBL:ENY82821.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_880_curated_2
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

181..603
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GYE0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05707.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_3
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

688..2466
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GP84_9SPHN
ParB-like protein {ECO:0000313|EMBL:KEQ53286.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
ParB-like protein; K03497 chromosome partitioning protein, ParB family
SCNpilot_expt_1000_bf_scaffold_880_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2585..2803)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5J4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82817.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3131..3430
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJT4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67292.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_880_curated_6
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3584..3814
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Variovorax sp. WDL1 RepID=M1KK03_9BURK
Uncharacterized protein {ECO:0000313|EMBL:AGF25458.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_7
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3807..4391
DNA (585bp) protein (195aa)
Signal peptidase S26 family protein n=1 Tax=Variovorax sp. WDL1 RepID=M1KEC9_9BURK
Signal peptidase S26 family protein {ECO:0000313|EMBL:AGF25459.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
conjugal transfer protein TraF
SCNpilot_expt_1000_bf_scaffold_880_curated_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4379..4981
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036A28B9
Putative lytic transglycosylase {ECO:0000313|EMBL:KHS45895.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
putative lytic transglycosylase
SCNpilot_expt_1000_bf_scaffold_880_curated_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5285..5641
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5I9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55587.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_880_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5940..7982
DNA (2043bp) protein (681aa)
Conjugal transfer protein TraI n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJS9_9SPHN
conjugal transfer protein TraI
Conjugal transfer protein TraI {ECO:0000313|EMBL:BAK67287.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_880_curated_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8116..8526
DNA (411bp) protein (137aa)
MucR family transcriptional regulator n=1 Tax=Sphingobium xenophagum RepID=UPI0003826CF1
MucR family transcriptional regulator
Transcriptional regulator, MucR family {ECO:0000313|EMBL:ABQ68743.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_880_curated_12
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8756..8986
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KAB3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB30363.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9069..10355
DNA (1287bp) protein (429aa)
ndh; NADH dehydrogenase; K03885 NADH dehydrogenase [EC:1.6.99.3] rbh
NADH dehydrogenase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89VJ4_BRADU
Putative NADH dehydrogenase {ECO:0000313|EMBL:KGJ65472.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
SCNpilot_expt_1000_bf_scaffold_880_curated_14
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10848..11723)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6WY17_OCHA4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS13871.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_880_curated_15
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12255..13466
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6Y1J8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:CDX44918.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_16
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13730..16102)
DNA (2373bp) protein (791aa)
Uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1G427_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAO01313.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_17
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16501..16752
DNA (252bp) protein (84aa)
Histone deacetylase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H7X1_9SPHN
Histone deacetylase {ECO:0000313|EMBL:EQB12406.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_expt_1000_bf_scaffold_880_curated_18
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17252..18175
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHK7_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS67500.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_880_curated_19
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18172..18756
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RSF4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD84881.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18736..19395)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RSF5_9BRAD
Sphingomonas taxi strain 30a NODE_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26007.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_21
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19388..20350)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RSF6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD84883.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20456..21232)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IHK0_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS67493.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_880_curated_23
Mesorhizobium sp. LNJC394B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21287..21751)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7FYF1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESY16125.1}; TaxID=1287274 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC394B00.;"
SCNpilot_expt_1000_bf_scaffold_880_curated_24
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22378..24255
DNA (1878bp) protein (626aa)
UPI0003CFA646 related cluster n=1 Tax=unknown RepID=UPI0003CFA646
Uncharacterized protein {ECO:0000313|EMBL:ESZ88717.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein; K09147 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_880_curated_25
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24255..25301
DNA (1047bp) protein (349aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
adenylosuccinate synthase; K01939 adenylosuccinate synthase [EC:6.3.4.4]
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000372839A
SCNpilot_expt_1000_bf_scaffold_880_curated_26
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25285..26421
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD1E3
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
Displaying 26 items

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