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SCNpilot_expt_1000_bf_scaffold_661_curated

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_661_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27..422)
DNA (396bp) protein (132aa)
Transposase n=1 Tax=Novosphingobium sp. AP12 RepID=J3APE8_9SPHN
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:AKH41842.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transposase IS116/IS110/IS902
SCNpilot_expt_1000_bf_scaffold_661_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

542..1153
DNA (612bp) protein (204aa)
Putative phage repressor n=1 Tax=Sphingopyxis macrogoltabida RepID=A9ZM06_SPHMC
Uncharacterized protein {ECO:0000313|EMBL:AKH41841.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
putative phage repressor
SCNpilot_expt_1000_bf_scaffold_661_curated_3
unknown

Not on your lists

comp(1939..2766)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B480E4
SCNpilot_expt_1000_bf_scaffold_661_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3074..5776)
DNA (2703bp) protein (901aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
gyrA; DNA gyrase subunit A; K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISI1_9SPHN
SCNpilot_expt_1000_bf_scaffold_661_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6187..7479
DNA (1293bp) protein (431aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISI3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66343.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7552..8025)
DNA (474bp) protein (158aa)
AsnC family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISI4_9SPHN
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:BAK66344.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8178..9905
DNA (1728bp) protein (576aa)
Putative two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISI5_9SPHN
putative two-component system sensor histidine kinase
Putative two-component system sensor histidine kinase {ECO:0000313|EMBL:BAK66345.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_8
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10311..11177)
DNA (867bp) protein (289aa)
quercetin 2,3-dioxygenase n=1 Tax=Cupriavidus sp. WS RepID=UPI00035E21D2
Quercetin 2,3-dioxygenase {ECO:0000313|EMBL:AJC20989.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
pirin; K06911
SCNpilot_expt_1000_bf_scaffold_661_curated_9
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11292..12203
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium meliloti RepID=UPI0002DAE68B
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEH83495.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_661_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12605..12838)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISX3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66483.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13071..14750
DNA (1680bp) protein (560aa)
ABC transporter ATP-binding protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GBL6_9SPHN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EQA98046.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
putative ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_661_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14794..15165)
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISX0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66480.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15170..15514)
DNA (345bp) protein (115aa)
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Carbonic anhydrase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW9_9SPHN
SCNpilot_expt_1000_bf_scaffold_661_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15881..16804
DNA (924bp) protein (308aa)
lipA; lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Lipoyl synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW8_9SPHN
SCNpilot_expt_1000_bf_scaffold_661_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16812..17285
DNA (474bp) protein (158aa)
Putative oligoketide cyclase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW7_9SPHN
putative oligoketide cyclase
Putative oligoketide cyclase {ECO:0000313|EMBL:BAK66477.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_16
unknown

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comp(17492..17800)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0C6
SCNpilot_expt_1000_bf_scaffold_661_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17903..18439)
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW6_9SPHN
hypothetical protein; K03743
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66476.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18450..19682)
DNA (1233bp) protein (411aa)
ispD_ispF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
Bifunctional enzyme IspD/IspF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW5_9SPHN
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19767..20813
DNA (1047bp) protein (349aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA-dihydrouridine synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW4_9SPHN
putative tRNA-dihydrouridine synthase
SCNpilot_expt_1000_bf_scaffold_661_curated_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20803..21906
DNA (1104bp) protein (368aa)
ntrB; nitrogen regulation protein NtrB; K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nitrogen regulation protein NtrB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW3_9SPHN
SCNpilot_expt_1000_bf_scaffold_661_curated_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21903..23354
DNA (1452bp) protein (484aa)
Nitrogen assimilation regulatory protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW2_9SPHN
ntrC; nitrogen assimilation regulatory protein; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:BAK66472.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23483..25765
DNA (2283bp) protein (761aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
ntrY; nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3]
Nitrogen regulation protein NtrY n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW1_9SPHN
SCNpilot_expt_1000_bf_scaffold_661_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25755..27122
DNA (1368bp) protein (456aa)
Nitrogen assimilation regulatory protein NtrX n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW0_9SPHN
ntrX; nitrogen assimilation regulatory protein NtrX; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX
Nitrogen assimilation regulatory protein NtrX {ECO:0000313|EMBL:BAK66470.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27282..27782
DNA (501bp) protein (167aa)
Protein Hfq n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV9_9SPHN
hfq; protein Hfq; K03666 host factor-I protein
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_25
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27922..29160
DNA (1239bp) protein (413aa)
GTPase HflX n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV8_9SPHN
hflX; putative GTP-binding protein HflX; K03665 GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29272..29703)
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG8_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66328.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29757..31232)
DNA (1476bp) protein (492aa)
Putative ABC transporter substrate binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISG9_9SPHN
putative ABC transporter substrate binding protein; K15580 oligopeptide transport system substrate-binding protein
Putative ABC transporter substrate binding protein {ECO:0000313|EMBL:BAK66329.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31541..31825)
DNA (285bp) protein (95aa)
Integration host factor subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH0_9SPHN
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
Integration host factor subunit beta {ECO:0000313|EMBL:BAK66330.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_661_curated_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(32047..33753)
DNA (1707bp) protein (569aa)
30S ribosomal protein S1 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH1_9SPHN
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
rpsA; 30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
SCNpilot_expt_1000_bf_scaffold_661_curated_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33932..34546)
DNA (615bp) protein (205aa)
cmk; cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cytidylate kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISH2_9SPHN
Displaying items 1-30 of 62 in total

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