ggKbase home page

SCNpilot_expt_1000_bf_scaffold_753_curated

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_753_curated_1
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..185
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJY2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJR26322.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_2
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(286..627)
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6N6_9SPHN
XRE family transcriptional regulator {ECO:0000313|EMBL:AJR24165.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_753_curated_3
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(620..979)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3FDW7_9BACL
Phage-related protein {ECO:0000313|EMBL:KFG89058.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_753_curated_4
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1021..2259)
DNA (1239bp) protein (413aa)
hypothetical protein n=1 Tax=Pseudomonas stutzeri RepID=UPI0002F138D0
Uncharacterized protein {ECO:0000313|EMBL:AJR24163.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
phage integrase family site specific recombinase
SCNpilot_expt_1000_bf_scaffold_753_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2688..4427
DNA (1740bp) protein (580aa)
Peptidase M28 family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILR6_9SPHN
peptidase M28 family protein
Peptidase M28 family protein {ECO:0000313|EMBL:BAK67659.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4591..5583
DNA (993bp) protein (331aa)
arabinose-5-phosphate isomerase; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
Arabinose-5-phosphate isomerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILR7_9SPHN
Arabinose-5-phosphate isomerase {ECO:0000313|EMBL:BAK67660.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5656..6459
DNA (804bp) protein (268aa)
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000313|EMBL:BAK67661.1}; EC=2.7.7.38 {ECO:0000313|EMBL:BAK67661.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILR8_9SPHN
SCNpilot_expt_1000_bf_scaffold_753_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6553..7374
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILR9_9SPHN
hypothetical protein; K06889
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67662.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7371..8909
DNA (1539bp) protein (513aa)
Putative capsule polysaccharide export protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS0_9SPHN
putative capsule polysaccharide export protein; K07266 capsular polysaccharide export protein
Putative capsule polysaccharide export protein {ECO:0000313|EMBL:BAK67663.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8906..10156
DNA (1251bp) protein (417aa)
Putative capsule polysaccharide export protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS1_9SPHN
putative capsule polysaccharide export protein; K07265 capsular polysaccharide export protein
Putative capsule polysaccharide export protein {ECO:0000313|EMBL:BAK67664.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10137..11318)
DNA (1182bp) protein (394aa)
Putative glycosyltransferase {ECO:0000313|EMBL:BAK67665.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAK67665.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative glycosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS2_9SPHN
putative glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_753_curated_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11324..12550)
DNA (1227bp) protein (409aa)
Polysaccharide export protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IC54_9SPHN
polysaccharide export protein; K01991 polysaccharide export outer membrane protein
Polysaccharide export protein {ECO:0000313|EMBL:CCA89879.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_13
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12696..13562)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003619589
Uncharacterized protein {ECO:0000313|EMBL:KEO96642.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_753_curated_14
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13588..14904)
DNA (1317bp) protein (439aa)
Glycosyl transferase group 1 n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DWU2_9GAMM
Glycosyl transferase group 1 {ECO:0000313|EMBL:EGV33296.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
group 1 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_753_curated_15
Hyphomonas johnsonii, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15143..16480)
DNA (1338bp) protein (446aa)
Glycosyl transferase, group 1 n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0ALS1_MARMM
Group 1 glycosyl transferase {ECO:0000313|EMBL:KCZ87579.1}; TaxID=1280950 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas johnsonii MHS-2.;"
group 1 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_753_curated_16
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16730..19447
DNA (2718bp) protein (906aa)
Glycosyltransferase n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5NE03_9BURK
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AGX88448.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_17
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19489..20190)
DNA (702bp) protein (234aa)
Methylase involved in ubiquinone/menaquinone biosynthesis-like protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SDE0_METPP
ubiquinone/menaquinone biosynthesis methylase-like protein
Methylase involved in ubiquinone/menaquinone biosynthesis-like protein {ECO:0000313|EMBL:ABM93579.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_expt_1000_bf_scaffold_753_curated_18
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20194..24609)
DNA (4416bp) protein (1472aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JFA0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ11005.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_753_curated_19
Ralstonia sp. AU12-08, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24676..25338)
DNA (663bp) protein (221aa)
ATP-binding protein n=1 Tax=Ralstonia sp. AU12-08 RepID=S9RTK8_9RALS
ATP-binding protein {ECO:0000313|EMBL:EPX97041.1}; TaxID=1235457 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. AU12-08.;"
cation effux pump BexA; K09689 capsular polysaccharide transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_753_curated_20
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25335..26144)
DNA (810bp) protein (270aa)
sugar ABC transporter permease n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000373357B
cpxB; capsule polysaccharide export inner-membrane protein; K09688 capsular polysaccharide transport system permease protein
Capsule polysaccharide export inner-membrane protein {ECO:0000313|EMBL:BAI97852.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_expt_1000_bf_scaffold_753_curated_21
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26137..27321)
DNA (1185bp) protein (395aa)
WcbD protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GIT9_9SPHN
WcbD protein {ECO:0000313|EMBL:EQB00637.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
wcbD; capsular polysaccharide export protein; K10107 capsular polysaccharide transport system permease protein
SCNpilot_expt_1000_bf_scaffold_753_curated_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27605..28591
DNA (987bp) protein (329aa)
putative peptidylarginine deiminase; K10536 agmatine deiminase [EC:3.5.3.12]
Putative peptidylarginine deiminase {ECO:0000313|EMBL:BAK67667.1}; EC=3.5.3.12 {ECO:0000313|EMBL:BAK67667.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative peptidylarginine deiminase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS4_9SPHN
SCNpilot_expt_1000_bf_scaffold_753_curated_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28819..29685
DNA (867bp) protein (289aa)
putative amidohydrolase; K12251 N-carbamoylputrescine amidase [EC:3.5.1.53]
Putative amidohydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS5_9SPHN
Putative amidohydrolase {ECO:0000313|EMBL:BAK67668.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29710..30000
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67669.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_753_curated_25
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30069..30431)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E965_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ62289.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_753_curated_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30583..31269)
DNA (687bp) protein (229aa)
Uracil-DNA glycosylase {ECO:0000313|EMBL:BAK65778.1}; EC=3.2.2.27 {ECO:0000313|EMBL:BAK65778.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Uracil-DNA glycosylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPV0_9SPHN
uracil-DNA glycosylase
SCNpilot_expt_1000_bf_scaffold_753_curated_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31331..31879
DNA (549bp) protein (183aa)
folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:BAK65777.1}; EC=2.7.6.3 {ECO:0000313|EMBL:BAK65777.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPU9_9SPHN
SCNpilot_expt_1000_bf_scaffold_753_curated_28
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32033..32971
DNA (939bp) protein (313aa)
Zn-dependent oxidoreductase, NADPH:quinone reductase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4ETD9_MODMB
Zn-dependent oxidoreductase {ECO:0000313|EMBL:ETX02929.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Zn-dependent oxidoreductase
SCNpilot_expt_1000_bf_scaffold_753_curated_29
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33137..33523
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L479_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79134.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_753_curated_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33523..34317
DNA (795bp) protein (265aa)
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1XWG1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AKH42147.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
Displaying items 1-30 of 40 in total

View Taxonomy