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scnpilot_p_inoc_scaffold_869_curated

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_869_curated_1
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..624)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002DB8CCB
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_869_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

741..3455
DNA (2715bp) protein (905aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42); K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6G3_9SPHN
scnpilot_p_inoc_scaffold_869_curated_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3452..3928
DNA (477bp) protein (159aa)
Thiol peroxidase, Bcp-type {ECO:0000313|EMBL:GAO54910.1}; EC=1.11.1.15 {ECO:0000313|EMBL:GAO54910.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
alkyl hydroperoxide reductase; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
alkyl hydroperoxide reductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B780DC
scnpilot_p_inoc_scaffold_869_curated_4
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3958..4752
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZTP4_9SPHN
Rhamnosyltransferase {ECO:0000313|EMBL:KEO96461.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_869_curated_5
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4903..5619
DNA (717bp) protein (239aa)
Membrane protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N6Y3_ERYLH
membrane protein
Membrane protein {ECO:0000313|EMBL:ABC64558.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_869_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5770..6642)
DNA (873bp) protein (291aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:AKH43158.1}; EC=2.7.7.9 {ECO:0000313|EMBL:AKH43158.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
phosphomannomutase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0CA4
scnpilot_p_inoc_scaffold_869_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6744..8027
DNA (1284bp) protein (428aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7); K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6F6_9SPHN
scnpilot_p_inoc_scaffold_869_curated_8
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8096..8341
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJV5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KGB53802.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
scnpilot_p_inoc_scaffold_869_curated_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8338..8571)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3C7_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27646.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_869_curated_10
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8576..9973)
DNA (1398bp) protein (466aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
class II fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHE7_9SPHN
scnpilot_p_inoc_scaffold_869_curated_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10004..10726)
DNA (723bp) protein (241aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100); K00023 acetoacetyl-CoA reductase [EC:1.1.1.36]
3-oxoacyl-[acyl-carrier-protein] reductase {ECO:0000313|EMBL:ABD27647.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ABD27647.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
3-oxoacyl-[acyl-carrier-protein] reductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3C6_NOVAD
scnpilot_p_inoc_scaffold_869_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10857..11618)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKD6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43163.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_869_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12041..12475
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6F2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43164.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_869_curated_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12554..15073
DNA (2520bp) protein (840aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFI6_9SPHN
scnpilot_p_inoc_scaffold_869_curated_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15070..15567
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P946_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43166.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K03643 LPS-assembly lipoprotein
scnpilot_p_inoc_scaffold_869_curated_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15564..16607
DNA (1044bp) protein (348aa)
DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
DNA polymerase III subunit delta n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1W2_9SPHN
DNA polymerase III subunit delta {ECO:0000313|EMBL:GAD48743.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_869_curated_17
unknown

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16809..17219
DNA (411bp) protein (137aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_869_curated_18
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17468..18163
DNA (696bp) protein (232aa)
Protein GumB n=1 Tax=Sphingomonas sp. LH128 RepID=J8VVI5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL25165.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
protein GumB
scnpilot_p_inoc_scaffold_869_curated_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18207..20420
DNA (2214bp) protein (738aa)
Exopolysaccharide biosynthesis protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZDU4_9SPHN
Exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EGD57219.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
exopolysaccharide biosynthesis protein
scnpilot_p_inoc_scaffold_869_curated_20
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20426..21598
DNA (1173bp) protein (391aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDU5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL24921.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_869_curated_21
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21617..22180)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E257
Uncharacterized protein {ECO:0000313|EMBL:EDL49638.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
OstA-like protein; K09774 lipopolysaccharide export system protein LptA
scnpilot_p_inoc_scaffold_869_curated_22
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22181..22825)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZTM9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48739.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
scnpilot_p_inoc_scaffold_869_curated_23
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22858..23475)
DNA (618bp) protein (206aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5]
Putative 3'-5' exonuclease n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1V6_9SPHN
3'-5' exonuclease {ECO:0000313|EMBL:KHS42048.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
scnpilot_p_inoc_scaffold_869_curated_24
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23616..24296
DNA (681bp) protein (227aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
uracil-DNA glycosylase (EC:3.2.2.-); K03648 uracil-DNA glycosylase [EC:3.2.2.27]
Uracil-DNA glycosylase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GET2_9SPHN
scnpilot_p_inoc_scaffold_869_curated_25
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24392..25348
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003196D77
Uncharacterized protein {ECO:0000313|EMBL:KFL47330.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase
scnpilot_p_inoc_scaffold_869_curated_26
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25511..26449
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003196D77
Uncharacterized protein {ECO:0000313|EMBL:KFL47330.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase
scnpilot_p_inoc_scaffold_869_curated_27

Not on your lists

26523..27878
DNA (1356bp) protein (452aa)
metal-dependent phosphohydrolase n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003701F71
Putative Metal-dependent phosphohydrolase {ECO:0000313|EMBL:CBH98017.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
metal dependent phosphohydrolase
scnpilot_p_inoc_scaffold_869_curated_28
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27883..28812)
DNA (930bp) protein (310aa)
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase {ECO:0000313|EMBL:AKH43144.1}; EC=1.14.11.- {ECO:0000313|EMBL:AKH43144.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IME5_9SPHN
tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase
scnpilot_p_inoc_scaffold_869_curated_29
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28840..29766)
DNA (927bp) protein (309aa)
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11]
Phosphofructokinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IP47_9SPHN
Phosphofructokinase {ECO:0000256|PIRNR:PIRNR000535}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_869_curated_30
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29793..31229)
DNA (1437bp) protein (479aa)
Glutamate synthase [NADPH] small chain {ECO:0000313|EMBL:AKH43141.1}; EC=1.4.1.13 {ECO:0000313|EMBL:AKH43141.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
glutamate synthase (NADH) small subunit (EC:1.4.1.14); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase small subunit n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJU2_9SPHN
Displaying items 1-30 of 32 in total

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