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scnpilot_p_inoc_scaffold_1062_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1062_curated_1
unknown

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comp(905..1231)
DNA (327bp) protein (109aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1062_curated_2
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2137..2862
DNA (726bp) protein (242aa)
TonB family C-terminal domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBC8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KDP96047.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
scnpilot_p_inoc_scaffold_1062_curated_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2868..3965)
DNA (1098bp) protein (366aa)
cytochrome-c peroxidase (EC:1.11.1.5); K00428 cytochrome c peroxidase [EC:1.11.1.5]
cytochrome C peroxidase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C1EB
Cytochrome C peroxidase {ECO:0000313|EMBL:KFD28859.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
scnpilot_p_inoc_scaffold_1062_curated_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3971..6454)
DNA (2484bp) protein (828aa)
secretin/tonb short domain protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C1EC
Energy transducer TonB {ECO:0000313|EMBL:KFD28860.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
secretin/tonb short domain protein
scnpilot_p_inoc_scaffold_1062_curated_5
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6901..7917
DNA (1017bp) protein (339aa)
LacI family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRC0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KJK25119.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
scnpilot_p_inoc_scaffold_1062_curated_6
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7905..9080)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003652C9D
Putative uncharacterized protein {ECO:0000313|EMBL:CBA30750.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
tcaB; Bcr/CflA family drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
scnpilot_p_inoc_scaffold_1062_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9373..12219
DNA (2847bp) protein (949aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ13_9SPHN
TonB-dependent receptor-like protein
Colicin I receptor {ECO:0000313|EMBL:AKH42234.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_1062_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12228..12920
DNA (693bp) protein (231aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRB5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68481.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1062_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12965..14344
DNA (1380bp) protein (460aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ1_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK67543.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1062_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14341..15201
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B600E0
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67189.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1062_curated_11
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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15236..16354
DNA (1119bp) protein (373aa)
12-oxophytodienoate reductase n=1 Tax=alpha proteobacterium L41A RepID=UPI0003779604
1,2-oxophytodienoate reductase {ECO:0000313|EMBL:KJV41651.1}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
NADH:flavin oxidoreductase/NADH oxidase
scnpilot_p_inoc_scaffold_1062_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16413..17972
DNA (1560bp) protein (520aa)
Putative FAD-linked oxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRB7_9SPHN
putative FAD-linked oxidase
Putative FAD-linked oxidase {ECO:0000313|EMBL:BAK68483.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1062_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17969..18349
DNA (381bp) protein (127aa)
Cytochrome c family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRB8_9SPHN
cytochrome c family protein
Cytochrome c family protein {ECO:0000313|EMBL:BAK68484.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1062_curated_14
unknown

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18346..18873
DNA (528bp) protein (176aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1062_curated_15
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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19066..20385
DNA (1320bp) protein (440aa)
Major facilitator superfamily MFS_1 n=1 Tax=Azospirillum amazonense Y2 RepID=G1XVF4_9PROT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EGY02751.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
major facilitator superfamily protein
scnpilot_p_inoc_scaffold_1062_curated_16
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20382..21257)
DNA (876bp) protein (292aa)
Transcriptional regulator, LysR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A333_STAND
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADH87751.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_p_inoc_scaffold_1062_curated_17
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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21339..22355
DNA (1017bp) protein (339aa)
Aldo/keto reductase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKR2_9SPHN
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:CCA92014.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_1062_curated_18
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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22381..23466
DNA (1086bp) protein (362aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003646FF0
Taurine catabolism dioxygenase TauD, TfdA family {ECO:0000313|EMBL:EXG79700.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
taurine dioxygenase
scnpilot_p_inoc_scaffold_1062_curated_19
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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23565..24341
DNA (777bp) protein (259aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
gip; putative hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000363C95D
scnpilot_p_inoc_scaffold_1062_curated_20
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24360..25241
DNA (882bp) protein (294aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000380F6A0
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:KFG91932.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
scnpilot_p_inoc_scaffold_1062_curated_21
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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25897..26277
DNA (381bp) protein (127aa)
Putative DNA-binding protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZR56_9SPHN
Putative DNA-binding protein {ECO:0000313|EMBL:GAD47829.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hemimethylated DNA-binding protein; K11940 heat shock protein HspQ
scnpilot_p_inoc_scaffold_1062_curated_22
unknown

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26372..26980
DNA (609bp) protein (203aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1062_curated_23
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27000..27878)
DNA (879bp) protein (293aa)
Putative ABC transporter permease protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHZ5_9SPHN
Inner membrane transport permease YadH {ECO:0000313|EMBL:AKH41114.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
multidrug ABC transporter; K09686 antibiotic transport system permease protein
scnpilot_p_inoc_scaffold_1062_curated_24
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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27966..28685
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WI51_9SPHN
GcrA cell cycle regulator {ECO:0000313|EMBL:KEO86040.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein; K13583 GcrA cell cycle regulator
Displaying 24 items

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