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scnpilot_p_inoc_scaffold_3352_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_3352_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..212
DNA (210bp) protein (70aa)
peptide chain release factor 3 n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD08A9
Peptide chain release factor 3 {ECO:0000313|EMBL:AKH43456.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
peptide chain release factor; K02837 peptide chain release factor 3
scnpilot_p_inoc_scaffold_3352_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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328..906
DNA (579bp) protein (193aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD08AA
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:AKH43457.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3352_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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912..1619
DNA (708bp) protein (236aa)
Putative metal-dependent hydrolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2R5_9SPHN
Putative metal-dependent hydrolase {ECO:0000313|EMBL:GAD49048.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
metal-dependent hydrolase
scnpilot_p_inoc_scaffold_3352_curated_4
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1881..2219
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEV4_9SPHN
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KEO86639.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
scnpilot_p_inoc_scaffold_3352_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2249..3655
DNA (1407bp) protein (469aa)
Ammonium transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKG7_9SPHN
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ammonia permease; K03320 ammonium transporter, Amt family
scnpilot_p_inoc_scaffold_3352_curated_6
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3890..4228
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=2 Tax=Novosphingobium RepID=I9CA67_9SPHN
Scaffold14, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31111.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
scnpilot_p_inoc_scaffold_3352_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4416..6557
DNA (2142bp) protein (714aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y7A4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49081.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TPR repeat-containing protein
scnpilot_p_inoc_scaffold_3352_curated_8
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6608..7534)
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E47B
Uncharacterized protein {ECO:0000313|EMBL:EDL49033.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3352_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7538..7939)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3J4_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO54924.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3352_curated_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7949..8386)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKJ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49090.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3352_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8383..9186)
DNA (804bp) protein (268aa)
Putative TerC family integral membrane protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUN1_9SPHN
Putative TerC family integral membrane protein {ECO:0000313|EMBL:GAD49089.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3352_curated_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9429..9974)
DNA (546bp) protein (182aa)
Uncharacterized protein n=2 Tax=Proteobacteria RepID=K9DAI9_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU75867.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
Displaying 12 items

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