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SCNpilot_cont_300_bf_scaffold_1559_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1559_curated_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1143..1850
DNA (708bp) protein (236aa)
transcriptional regulator n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037B04BE
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14348.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
winged helix family two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_300_bf_scaffold_1559_curated_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1840..3189
DNA (1350bp) protein (450aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036354EC
integral membrane sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_1559_curated_3
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3311..6529
DNA (3219bp) protein (1073aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWQ6_9SPHN
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14346.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Acriflavin resistance protein
SCNpilot_cont_300_bf_scaffold_1559_curated_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8459..8995
DNA (537bp) protein (179aa)
Efflux transporter, outer membrane factor (OMF) lipo, NodT family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WWQ8_9SPHN
DNA, contig: SP636 {ECO:0000313|EMBL:GAN14344.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
RND efflux system outer membrane lipoprotein
SCNpilot_cont_300_bf_scaffold_1559_curated_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9284..10150)
DNA (867bp) protein (289aa)
XshC-Cox1-family protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288B6DF
Putative xanthine dehydrogenase accessory factor {ECO:0000313|EMBL:GAL99954.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
XshC-Cox1-family protein; K07402 xanthine dehydrogenase accessory factor
SCNpilot_cont_300_bf_scaffold_1559_curated_6
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10204..12402)
DNA (2199bp) protein (733aa)
hypothetical protein; K11177 xanthine dehydrogenase YagR molybdenum-binding subunit [EC:1.17.1.4]
xanthine dehydrogenase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CCF3F
Xanthine dehydrogenase {ECO:0000313|EMBL:EWY41647.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_cont_300_bf_scaffold_1559_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12399..13367)
DNA (969bp) protein (323aa)
aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; K11178 xanthine dehydrogenase YagS FAD-binding subunit [EC:1.17.1.4]
molybdopterin dehydrogenase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7B25B
Xanthine dehydrogenase {ECO:0000313|EMBL:AIT06824.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_1559_curated_8
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13364..13903)
DNA (540bp) protein (180aa)
(2Fe-2S)-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003632305
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:EZP56552.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
2Fe-2S iron-sulfur cluster binding domain-containing protein; K13483 xanthine dehydrogenase YagT iron-sulfur-binding subunit
SCNpilot_cont_300_bf_scaffold_1559_curated_9
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14059..14301
DNA (243bp) protein (81aa)
Transcriptional regulator, MarR family n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESK9_METSB
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ACK50344.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_1559_curated_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15008..16213)
DNA (1206bp) protein (402aa)
Citrate synthase {ECO:0000313|EMBL:GAO53285.1}; EC=2.3.3.1 {ECO:0000313|EMBL:GAO53285.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
regulatory protein MerR; K01647 citrate synthase [EC:2.3.3.1]
Regulatory protein MerR n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IIW4_BEII9
SCNpilot_cont_300_bf_scaffold_1559_curated_11
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16302..19247
DNA (2946bp) protein (982aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZGD9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT70797.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_1559_curated_12
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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19247..20722
DNA (1476bp) protein (492aa)
Sugar transporter n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PDL5_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_cont_300_bf_scaffold_1559_curated_13
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20736..21557
DNA (822bp) protein (274aa)
Poly(Aspartic acid) hydrolase n=1 Tax=Pseudomonas sp. CFII64 RepID=S6HG03_9PSED
Hydrolase {ECO:0000313|EMBL:KFE52752.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
poly(aspartic acid) hydrolase
SCNpilot_cont_300_bf_scaffold_1559_curated_14
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21554..22948
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000365F0AF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ69620.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_1559_curated_15
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22935..23240
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369B266
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB58853.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
SCNpilot_cont_300_bf_scaffold_1559_curated_16
unknown

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comp(23427..23546)
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 16 items

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