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SCNpilot_cont_300_bf_scaffold_1267_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1267_curated_1
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..770)
DNA (768bp) protein (256aa)
putative hydroxymethylglutaryl-CoA lyase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]
Putative hydroxymethylglutaryl-CoA lyase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C392_HYPNA
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_300_bf_scaffold_1267_curated_2
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

859..1998
DNA (1140bp) protein (380aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKL6_9SPHN
L-carnitine dehydratase/bile acid-inducible protein F
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_cont_300_bf_scaffold_1267_curated_3
Sphingomonas sp. JE1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1995..3398
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000313|EMBL:AJW29438.1}; EC=4.2.1.33 {ECO:0000313|EMBL:AJW29438.1};; TaxID=1628059 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. JE1.;"
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33 4.2.1.35); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKL5_9SPHN
SCNpilot_cont_300_bf_scaffold_1267_curated_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3395..4057
DNA (663bp) protein (221aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036468ED
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
SCNpilot_cont_300_bf_scaffold_1267_curated_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4035..4673)
DNA (639bp) protein (213aa)
Putative transcriptional regulator, TetR family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TTZ8_9BRAD
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:CCE09936.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1267_curated_6
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4772..5437
DNA (666bp) protein (222aa)
O-methyltransferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZI3_9SPHN
O-methyltransferase
O-methyltransferase {ECO:0000313|EMBL:AGH49155.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5383..6396)
DNA (1014bp) protein (338aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVA7_9SPHN
DNA, contig: SP613 {ECO:0000313|EMBL:GAN12757.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_300_bf_scaffold_1267_curated_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6487..7383
DNA (897bp) protein (299aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVA9_9SPHN
DNA, contig: SP613 {ECO:0000313|EMBL:GAN12758.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_1267_curated_9
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7403..8551)
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000377746A
Putative FAD-dependent monooxygenase {ECO:0000313|EMBL:ENN88169.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
monooxygenase, FAD-binding protein
SCNpilot_cont_300_bf_scaffold_1267_curated_10
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8659..9360)
DNA (702bp) protein (234aa)
hypothetical protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H2Q5_GLUDA
Uncharacterized protein {ECO:0000313|EMBL:CAP54185.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_300_bf_scaffold_1267_curated_11
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9557..10318
DNA (762bp) protein (254aa)
putative 3-oxoacyl-[acyl-carrier-protein] reductase, Short-chain dehydrogenase (EC:1.1.1.100)
Putative 3-oxoacyl-[acyl-carrier-protein] reductase, Short-chain dehydrogenase {ECO:0000313|EMBL:CAP63753.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CAP63753.1};; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
short-chain dehydrogenase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248ABA1
SCNpilot_cont_300_bf_scaffold_1267_curated_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10325..11236)
DNA (912bp) protein (304aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VBN7_SPHWW
alpha/beta hydrolase domain-containing protein
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ABQ69703.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_1267_curated_13
unknown

Not on your lists

comp(11368..12450)
DNA (1083bp) protein (361aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1267_curated_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12545..13858)
DNA (1314bp) protein (438aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN29_9SPHN
two-component system sensor histidine kinase
SCNpilot_cont_300_bf_scaffold_1267_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13855..14508)
DNA (654bp) protein (218aa)
OmpR family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN28_9SPHN
OmpR family two-component system response regulator
OmpR family two-component system response regulator {ECO:0000313|EMBL:BAK65476.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14588..15610
DNA (1023bp) protein (341aa)
Heavy metal efflux system protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN27_9SPHN
heavy metal efflux system protein; K15727 cobalt-zinc-cadmium resistance protein CzcB
Heavy metal efflux system protein {ECO:0000313|EMBL:BAK65475.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15610..18576
DNA (2967bp) protein (989aa)
Heavy metal efflux system protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN26_9SPHN
Heavy metal efflux system protein {ECO:0000313|EMBL:BAK65474.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
heavy metal efflux system protein
SCNpilot_cont_300_bf_scaffold_1267_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18601..18900
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN25_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65473.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18897..20114
DNA (1218bp) protein (406aa)
Heavy metal efflux system protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN24_9SPHN
heavy metal efflux system protein
Heavy metal efflux system protein {ECO:0000313|EMBL:BAK65472.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_20
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20131..21726)
DNA (1596bp) protein (532aa)
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H8A7_9SPHN
DNA ligase, ATP-dependent, family {ECO:0000313|EMBL:EZP82043.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_21
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21728..22726)
DNA (999bp) protein (333aa)
RNA procession exonuclease-like protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0ILD7_9SPHN
RNA procession exonuclease-like protein {ECO:0000313|EMBL:EQB12590.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
hypothetical protein; K07577 putative mRNA 3-end processing factor
SCNpilot_cont_300_bf_scaffold_1267_curated_22

Not on your lists

comp(22882..23406)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W635_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU09949.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23612..25984
DNA (2373bp) protein (791aa)
membrane-bound PQQ-dependent dehydrogenase; K00117 quinoprotein glucose dehydrogenase [EC:1.1.5.2]
Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WY22_9SPHN
Gcd protein {ECO:0000313|EMBL:GAN15319.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_24
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25991..26599)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0ILC6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB10454.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
isochorismatase
SCNpilot_cont_300_bf_scaffold_1267_curated_25
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26937..28298
DNA (1362bp) protein (454aa)
Ribosomal protein S6 modification protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S6W0_9SPHN
ribosomal protein S6 modification protein
Ribosomal protein S6 modification protein {ECO:0000313|EMBL:AGH50254.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_26
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28295..29086
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S5M8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50253.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_27
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29242..30027
DNA (786bp) protein (262aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000310DDB9
Uncharacterized protein {ECO:0000313|EMBL:EZP56767.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein; K07090
SCNpilot_cont_300_bf_scaffold_1267_curated_28
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30041..31096)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GDT0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB01916.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
putative dibenzothiophene desulfurization enzyme B
SCNpilot_cont_300_bf_scaffold_1267_curated_29
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31111..32475)
DNA (1365bp) protein (455aa)
Luciferase-like protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S7E4_9SPHN
luciferase-like protein
Luciferase-like protein {ECO:0000313|EMBL:AGH50868.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_1267_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32481..33218)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HXH2_9SPHN
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:AJP70664.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
Displaying 30 items

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