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SCNpilot_cont_300_bf_scaffold_1067_curated

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_1067_curated_1
unknown

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1..105
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_1067_curated_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102..560
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A124E
Uncharacterized protein {ECO:0000313|EMBL:GAO55502.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1067_curated_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

560..3193
DNA (2634bp) protein (878aa)
Hopanoid biosynthesis associated RND transporter like protein HpnN n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7I0_9SPHN
Hopanoid-associated RND transporter, hpnN {ECO:0000313|EMBL:GAO55501.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated RND transporter-like protein HpnN
SCNpilot_cont_300_bf_scaffold_1067_curated_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3295..4182)
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7G4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55486.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1067_curated_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4272..5180)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0F6
Uncharacterized protein {ECO:0000313|EMBL:GAO55487.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1067_curated_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5190..6080)
DNA (891bp) protein (297aa)
Hopanoid biosynthesis associated protein HpnK n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7G6_9SPHN
Cellobiose phosphotransferase system celC {ECO:0000313|EMBL:GAO55488.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated protein HpnK
SCNpilot_cont_300_bf_scaffold_1067_curated_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6166..7614)
DNA (1449bp) protein (483aa)
radical SAM protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002881EB0
Fe-S oxidoreductase {ECO:0000313|EMBL:GAO55489.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated radical SAM protein HpnJ
SCNpilot_cont_300_bf_scaffold_1067_curated_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7684..8727)
DNA (1044bp) protein (348aa)
glucosyltransferase; K00720 ceramide glucosyltransferase [EC:2.4.1.80]
hopanoid biosynthesis associated glycosyl transferase HpnI n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI00037F2A1F
Hopanoid biosynthesis associated glucosyltransferase {ECO:0000313|EMBL:GAO40257.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_300_bf_scaffold_1067_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8948..9952
DNA (1005bp) protein (335aa)
Dihydroflavonol-4-reductase {ECO:0000313|EMBL:GAO55491.1}; EC=1.1.1.219 {ECO:0000313|EMBL:GAO55491.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid-associated sugar epimerase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219]
NAD-dependent dehydratase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0FB
SCNpilot_cont_300_bf_scaffold_1067_curated_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11018..11842
DNA (825bp) protein (275aa)
Squalene synthase HpnC n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H1_9SPHN
Squalene synthase HpnC {ECO:0000313|EMBL:EGD59483.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
squalene synthase HpnC
SCNpilot_cont_300_bf_scaffold_1067_curated_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11839..12672
DNA (834bp) protein (278aa)
Phytoene synthase {ECO:0000313|EMBL:GAO55494.1}; EC=2.5.1.32 {ECO:0000313|EMBL:GAO55494.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
phytoene synthase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0FF
squalene synthase HpnD
SCNpilot_cont_300_bf_scaffold_1067_curated_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12669..13922
DNA (1254bp) protein (418aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000318B9D6
Phytoene desaturase {ECO:0000313|EMBL:GAO55495.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
squalene-associated FAD-dependent desaturase
SCNpilot_cont_300_bf_scaffold_1067_curated_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13976..14749
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C3E16
Sphingomonas taxi strain 30a NODE_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28311.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
NUDIX hydrolase
SCNpilot_cont_300_bf_scaffold_1067_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14860..15411)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB517
Uncharacterized protein {ECO:0000313|EMBL:AJP70621.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1067_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15610..18111)
DNA (2502bp) protein (834aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C66D4
Uncharacterized protein {ECO:0000313|EMBL:AJP74781.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_1067_curated_16
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18111..18512)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003625869
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_1067_curated_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18509..19327)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003790603
Sphingomonas taxi strain 30a NODE_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26743.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
Type IV secretory pathway VirJ component-like protein
SCNpilot_cont_300_bf_scaffold_1067_curated_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19598..20359
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B446BE
Protein ImuA {ECO:0000313|EMBL:AJP74622.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K14160 protein ImuA
SCNpilot_cont_300_bf_scaffold_1067_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20469..22241
DNA (1773bp) protein (591aa)
protein ImuB n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCFAF
Protein ImuB {ECO:0000313|EMBL:AJP74621.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
imuB; protein ImuB; K14161 protein ImuB
SCNpilot_cont_300_bf_scaffold_1067_curated_20
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22313..25681
DNA (3369bp) protein (1123aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
dnaE; DNA polymerase III alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7]
DNA polymerase III subunit alpha n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCFAC
SCNpilot_cont_300_bf_scaffold_1067_curated_21
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25858..26166)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UUN6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82019.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_1067_curated_22
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26313..27332)
DNA (1020bp) protein (340aa)
2-keto-4-pentenoate hydratase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003723966
Uncharacterized protein {ECO:0000313|EMBL:GAM00925.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
fumarylacetoacetate hydrolase
SCNpilot_cont_300_bf_scaffold_1067_curated_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27511..28665
DNA (1155bp) protein (385aa)
long-chain acyl-CoA dehydrogenase (EC:1.3.99.13); K00255 long-chain-acyl-CoA dehydrogenase [EC:1.3.99.13]
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD7BC
Sphingomonas taxi strain 30a NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29397.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_1067_curated_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29074..30414
DNA (1341bp) protein (447aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase n=1 Tax=Sphingomonas melonis RepID=UPI00037F49E0
DEAD/DEAH box helicase {ECO:0000313|EMBL:AIT06851.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_1067_curated_25
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30599..31264)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036ADDD1
Putative nitroreductase {ECO:0000313|EMBL:GAO39840.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
nitroreductase
SCNpilot_cont_300_bf_scaffold_1067_curated_26
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31347..32531
DNA (1185bp) protein (395aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F5532
Putative acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAO39837.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_cont_300_bf_scaffold_1067_curated_27
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32675..33457
DNA (783bp) protein (261aa)
UPI0003D03844 related cluster n=1 Tax=unknown RepID=UPI0003D03844
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_300_bf_scaffold_1067_curated_28
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33596..34027
DNA (432bp) protein (144aa)
thioesterase superfamily protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003681425
Thioesterase superfamily {ECO:0000313|EMBL:ABF54859.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
Displaying 28 items

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