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SCNpilot_cont_300_bf_scaffold_652_curated

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Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_652_curated_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1818
DNA (1818bp) protein (606aa)
Sphingomonas taxi strain 30a NODE_14, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26385.1}; EC=5.4.99.2 {ECO:0000313|EMBL:KIU26385.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
methylmalonyl-CoA mutase (EC:5.4.99.2)
methylmalonyl-CoA mutase n=1 Tax=Sphingomonas melonis RepID=UPI000378307A
SCNpilot_cont_300_bf_scaffold_652_curated_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1815..3089
DNA (1275bp) protein (425aa)
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase {ECO:0000313|EMBL:AGH49917.1}; EC=2.5.1.49 {ECO:0000313|EMBL:AGH49917.1};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SH56_9SPHN
SCNpilot_cont_300_bf_scaffold_652_curated_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3086..4090
DNA (1005bp) protein (335aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
biotin synthase (EC:2.8.1.6); K01012 biotin synthetase [EC:2.8.1.6]
biotin synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7B82F
SCNpilot_cont_300_bf_scaffold_652_curated_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4269..6248
DNA (1980bp) protein (660aa)
pccA; propionyl-CoA carboxylase alpha chain (EC:6.4.1.3); K01965 propionyl-CoA carboxylase alpha chain [EC:6.4.1.3]
acetyl-CoA carboxylase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036EE061
Acetyl-CoA carboxylase {ECO:0000313|EMBL:AIT07331.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_652_curated_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6294..6893)
DNA (600bp) protein (200aa)
hypothetical protein; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037ED3F4
MobA {ECO:0000313|EMBL:AIT06828.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_652_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7080..8069
DNA (990bp) protein (330aa)
glycerophosphoryl diester phosphodiesterase (EC:3.1.4.46); K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037E8F00
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:AIT08177.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_652_curated_7
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8066..8323
DNA (258bp) protein (86aa)
Putative lipoprotein n=1 Tax=Sphingomonas sp. S17 RepID=F3X2K2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAL99959.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_652_curated_8
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8563..10800)
DNA (2238bp) protein (746aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y462_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KGB55567.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
outer membrane receptor (OMR) family protein
SCNpilot_cont_300_bf_scaffold_652_curated_9
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10909..12165)
DNA (1257bp) protein (419aa)
oxidoreductase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC26
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_652_curated_10
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12257..12742)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPG6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KCZ47535.1}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_652_curated_11
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12886..13395
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5V9_AGRVS
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_652_curated_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13392..14567
DNA (1176bp) protein (392aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:AEG51100.1}; EC=1.3.8.1 {ECO:0000313|EMBL:AEG51100.1};; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Butyryl-CoA dehydrogenase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F3T8_SPHCR
SCNpilot_cont_300_bf_scaffold_652_curated_13
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14695..15903)
DNA (1209bp) protein (403aa)
Tat (Twin-arginine translocation) pathway signal sequence domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3G8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM00444.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_652_curated_14
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15914..17437)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C149_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP50779.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_652_curated_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17536..18990)
DNA (1455bp) protein (485aa)
RND transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32C0B
RND efflux system of outer membrane lipoprotein, nodT family {ECO:0000313|EMBL:GAO55213.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RND efflux system outer membrane lipoprotein
SCNpilot_cont_300_bf_scaffold_652_curated_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18987..22238)
DNA (3252bp) protein (1084aa)
nodulation protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4D5E7
Cobalt-zinc-cadmium resistance protein czcA {ECO:0000313|EMBL:GAO55214.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acriflavin resistance protein; K07789 RND superfamily, multidrug transport protein MdtC
SCNpilot_cont_300_bf_scaffold_652_curated_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22235..25393)
DNA (3159bp) protein (1053aa)
acriflavin resistance protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B61004
Acriflavin resistance protein {ECO:0000313|EMBL:GAO55215.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acriflavin resistance protein; K07788 RND superfamily, multidrug transport protein MdtB
SCNpilot_cont_300_bf_scaffold_652_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25390..26445)
DNA (1056bp) protein (352aa)
membrane protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7A765
Co/Zn/Cd efflux system membrane fusion protein {ECO:0000313|EMBL:GAO55216.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA
SCNpilot_cont_300_bf_scaffold_652_curated_19
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26694..27602)
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J4A3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32776.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_652_curated_20
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27807..30998
DNA (3192bp) protein (1064aa)
RND transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J7G8_9SPHN
RND transporter {ECO:0000313|EMBL:EQB32777.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
acriflavin resistance protein
SCNpilot_cont_300_bf_scaffold_652_curated_21
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30991..32199
DNA (1209bp) protein (403aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFC2_SPHWW
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABQ70988.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_652_curated_22
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32189..33733
DNA (1545bp) protein (515aa)
RND transporter n=1 Tax=Sphingomonas wittichii RepID=UPI00031B2CE1
RND transporter {ECO:0000313|EMBL:AJR23455.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
RND efflux system outer membrane lipoprotein
SCNpilot_cont_300_bf_scaffold_652_curated_23
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33770..34810
DNA (1041bp) protein (347aa)
peptidase T2 asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5]
peptidase T n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B40F10
Asparaginase {ECO:0000313|EMBL:EJL24057.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
SCNpilot_cont_300_bf_scaffold_652_curated_24
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34854..35717)
DNA (864bp) protein (288aa)
aspartyl/asparaginyl beta-hydroxylase; K12979 beta-hydroxylase [EC:1.14.11.-]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037589A1
Aspartyl beta-hydroxylase {ECO:0000313|EMBL:KHA63695.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_300_bf_scaffold_652_curated_25
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35916..38822
DNA (2907bp) protein (969aa)
pqqL; putative Zn-dependent peptidase; K07263 zinc protease [EC:3.4.24.-]
peptidase M16 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B72100
DNA, contig: SP658 {ECO:0000313|EMBL:GAN15467.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_652_curated_26
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38930..40714)
DNA (1785bp) protein (595aa)
AMP-dependent synthetase n=1 Tax=Sphingomonas melonis RepID=UPI000361C3DB
AMP-binding enzyme family protein {ECO:0000313|EMBL:EZP52622.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
AMP-dependent synthetase/ligase
SCNpilot_cont_300_bf_scaffold_652_curated_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40847..42625
DNA (1779bp) protein (593aa)
ggt; gamma-glutamyltranspeptidase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
gamma-glutamyltransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B798FB
Gamma-glutamyltransferase {ECO:0000313|EMBL:AJP74776.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_652_curated_28
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42941..43795
DNA (855bp) protein (285aa)
AraC family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CACE5
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:GAO40626.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
AraC family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_652_curated_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43987..44412
DNA (426bp) protein (142aa)
AsnC family transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CACE4
AsnC family transcriptional regulator {ECO:0000313|EMBL:AJP70732.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
BadM/Rrf2-family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_652_curated_30
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44412..45875
DNA (1464bp) protein (488aa)
cysteine desulfarase n=1 Tax=Sphingomonas elodea RepID=UPI00026302CB
SufB protein {ECO:0000313|EMBL:GAN15211.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
cysteine desulfurase activator complex subunit SufB; K09014 Fe-S cluster assembly protein SufB
Displaying items 1-30 of 82 in total

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