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SCNpilot_cont_300_bf_scaffold_612_curated

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_612_curated_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54..1082
DNA (1029bp) protein (343aa)
amine dehydrogenase (EC:1.4.99.3); K15229 methylamine dehydrogenase heavy chain [EC:1.4.9.1]
amine dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI00036826DF
Amine dehydrogenase {ECO:0000313|EMBL:EGD60114.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_612_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1079..1576
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P7_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26126.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_612_curated_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1576..2166
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P6_NOVAD
Methylamine utilization protein mauD {ECO:0000313|EMBL:GAO57022.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_612_curated_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2170..2718
DNA (549bp) protein (183aa)
Methylamine dehydrogenase light chain {ECO:0000313|EMBL:GAO57023.1}; EC=1.4.9.1 {ECO:0000313|EMBL:GAO57023.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amine dehydrogenase (EC:1.4.99.3); K15228 methylamine dehydrogenase light chain [EC:1.4.9.1]
Amine dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5K2_9SPHN
SCNpilot_cont_300_bf_scaffold_612_curated_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2715..3161
DNA (447bp) protein (149aa)
Cytochrome c, class I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P4_NOVAD
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:ABD26129.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_612_curated_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3250..3540
DNA (291bp) protein (97aa)
Cytochrome c, class I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P3_NOVAD
Cytochrome c in methylamine utilization cluster {ECO:0000313|EMBL:GAO57025.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c, class I
SCNpilot_cont_300_bf_scaffold_612_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3555..5798
DNA (2244bp) protein (748aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P2_NOVAD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABD26131.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_612_curated_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5811..7214
DNA (1404bp) protein (468aa)
Aldehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P1_NOVAD
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABD26132.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_300_bf_scaffold_612_curated_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7211..8842
DNA (1632bp) protein (544aa)
AMP-binding protein (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO57028.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_cont_300_bf_scaffold_612_curated_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8908..10077
DNA (1170bp) protein (390aa)
TetR family transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BBA0
Uncharacterized protein {ECO:0000313|EMBL:GAD48586.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_612_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10218..11756
DNA (1539bp) protein (513aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248BBA3
Uncharacterized protein {ECO:0000313|EMBL:GAD48585.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
lipoprotein
SCNpilot_cont_300_bf_scaffold_612_curated_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11919..14102
DNA (2184bp) protein (728aa)
dimethylglycine dehydrogenase; K00315 dimethylglycine dehydrogenase [EC:1.5.8.4]
dimethylglycine dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003752329
Uncharacterized protein {ECO:0000313|EMBL:EGD58276.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_612_curated_13
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14135..14374
DNA (240bp) protein (80aa)
dimethylglycine dehydrogenase-like protein; K00315 dimethylglycine dehydrogenase [EC:1.5.8.4]
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAU5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD58276.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_612_curated_14
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14379..15626
DNA (1248bp) protein (416aa)
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAU4_9SPHN
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EGD58278.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Iron-sulfur cluster-binding protein; K00479 Rieske 2Fe-2S family protein
SCNpilot_cont_300_bf_scaffold_612_curated_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15626..16879
DNA (1254bp) protein (418aa)
sarcosine oxidase subunit beta (EC:1.5.3.1); K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase beta subunit family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAU3_9SPHN
Sarcosine oxidase beta subunit family protein {ECO:0000313|EMBL:EGD58279.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_612_curated_16
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17094..17366
DNA (273bp) protein (91aa)
soxD; sarcosine oxidase, subunit delta (EC:1.5.3.1); K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
sarcosine oxidase subunit delta n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3508F
Sarcosine oxidase, subunit delta {ECO:0000313|EMBL:EGD58280.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_300_bf_scaffold_612_curated_17
unknown

Not on your lists

comp(17780..18607)
DNA (828bp) protein (276aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_612_curated_18
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19867..20166
DNA (300bp) protein (100aa)
sarcosine oxidase subunit alpha family; K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
sarcosine oxidase subunit alpha, partial n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4A0AD
Sarcosine oxidase, alpha subunit family {ECO:0000313|EMBL:ACL62672.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_300_bf_scaffold_612_curated_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20159..20683
DNA (525bp) protein (175aa)
sarcosine oxidase subunit gamma n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3D50B
Sarcosine oxidase gamma subunit {ECO:0000313|EMBL:EGD58282.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
soxG; sarcosine oxidase, gamma subunit
SCNpilot_cont_300_bf_scaffold_612_curated_20
unknown

Not on your lists

20826..21050
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_612_curated_21
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21097..21471)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B56A35
MarR family transcriptional regulator
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_cont_300_bf_scaffold_612_curated_22
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21506..22081)
DNA (576bp) protein (192aa)
DNA repair protein RadC n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HML7_9SPHN
DNA repair protein RadC {ECO:0000313|EMBL:EQB17621.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
radC; DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_cont_300_bf_scaffold_612_curated_23
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22021..22500)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YS33_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAD58261.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_612_curated_24
unknown

Not on your lists

comp(22550..22888)
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_612_curated_25
unknown

Not on your lists

comp(22957..23508)
DNA (552bp) protein (184aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_612_curated_26
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23911..24861)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4ED41
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EGD58283.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
oxyR; LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_612_curated_27
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24982..25842
DNA (861bp) protein (287aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
formyltetrahydrofolate deformylase; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
Formyltetrahydrofolate deformylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAT8_9SPHN
SCNpilot_cont_300_bf_scaffold_612_curated_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25839..26333
DNA (495bp) protein (165aa)
DNA-binding protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B48BDA
YbaK/prolyl-tRNA synthetase associated region {ECO:0000313|EMBL:EGD58285.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
YbaK/prolyl-tRNA synthetase associated domain-containing protein
SCNpilot_cont_300_bf_scaffold_612_curated_29
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26468..27598)
DNA (1131bp) protein (377aa)
Protein tyrosine/serine phosphatase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SJS4_9SPHN
protein tyrosine/serine phosphatase
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:AGH50832.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_300_bf_scaffold_612_curated_30
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27842..28888)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4E15E
Uncharacterized protein {ECO:0000313|EMBL:KGM32476.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
alpha/beta hydrolase
Displaying items 1-30 of 113 in total

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