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SCNpilot_cont_300_bf_scaffold_613_curated

Search features with annotation key words

Displaying items 1-30 of 236 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_613_curated_1
unknown

Not on your lists

comp(1..1776)
DNA (1776bp) protein (592aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_613_curated_2
unknown

Not on your lists

comp(1773..2858)
DNA (1086bp) protein (362aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_613_curated_3
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2982..4400)
DNA (1419bp) protein (473aa)
Type I secretion membrane fusion protein, HlyD family n=1 Tax=Caulobacter sp. AP07 RepID=J2HPT9_9CAUL
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:EJL37853.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
HlyD family type I secretion membrane fusion protein; K11003 hemolysin D
SCNpilot_cont_300_bf_scaffold_613_curated_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4404..6557)
DNA (2154bp) protein (718aa)
Type I secretion system ATPase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SXS7_CAUSK
type I secretion system ATPase; K11004 ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Type I secretion system ATPase {ECO:0000313|EMBL:ABZ73289.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_613_curated_5
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7030..8184)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MK42_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW15778.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_curated_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8600..9415)
DNA (816bp) protein (272aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
recombinase RecJ n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380A002
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29678.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_613_curated_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9433..10410)
DNA (978bp) protein (326aa)
recJ; single-stranded DNA-specific exonuclease; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
recombinase RecJ n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287ED63
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29678.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_613_curated_8
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10512..10832)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GV96_SPHAL
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_300_bf_scaffold_613_curated_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11784..12419
DNA (636bp) protein (212aa)
Glutathione S-transferase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XK37_SORCE
glutathione S-transferase
Glutathione S-transferase {ECO:0000313|EMBL:AGP32165.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_cont_300_bf_scaffold_613_curated_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12421..13041)
DNA (621bp) protein (207aa)
putative oxygenase; K00472 prolyl 4-hydroxylase [EC:1.14.11.2]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036732F2
DNA, contig: SP630 {ECO:0000313|EMBL:GAN13916.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_613_curated_11
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13179..14186)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDE3
Uncharacterized protein {ECO:0000313|EMBL:EIZ80244.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_curated_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14304..15338)
DNA (1035bp) protein (345aa)
glucosyl transferase n=1 Tax=Sphingomonas melonis RepID=UPI0003798867
Glycosyl transferase 2 family protein {ECO:0000313|EMBL:EZP51071.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_curated_13
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15474..17279)
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000373A751
Uncharacterized protein {ECO:0000313|EMBL:GAM02666.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_curated_14
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17408..19012)
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003795D1C
DNA, contig: SP614 {ECO:0000313|EMBL:GAN13193.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
peptidase S10 family protein
SCNpilot_cont_300_bf_scaffold_613_curated_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19289..21394)
DNA (2106bp) protein (702aa)
GTP pyrophosphokinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B48F35
Sphingomonas taxi strain 30a NODE_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26533.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
(p)ppGpp synthetase I SpoT/RelA
SCNpilot_cont_300_bf_scaffold_613_curated_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21498..21860)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D7954
Uncharacterized protein {ECO:0000313|EMBL:AJP73073.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_613_curated_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21994..22473
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369A5E2
Sphingomonas taxi strain 30a NODE_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26531.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
HxlR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_613_curated_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22597..23553)
DNA (957bp) protein (319aa)
flavonol synthase n=2 Tax=Sphingomonas melonis RepID=UPI0003814720
Flavonol synthase {ECO:0000313|EMBL:AIT06371.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
2OG-Fe(II) oxygenase
SCNpilot_cont_300_bf_scaffold_613_curated_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23728..24051)
DNA (324bp) protein (108aa)
DNA-binding protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003614680
Nucleoid-associated protein NX02_04975 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_curated_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24048..25664)
DNA (1617bp) protein (539aa)
DNA polymerase III subunit gamma/tau n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B676BA
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29676.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA polymerase III subunits gamma and tau
SCNpilot_cont_300_bf_scaffold_613_curated_21
unknown

Not on your lists

comp(25897..26154)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003779B7D
SCNpilot_cont_300_bf_scaffold_613_curated_22
unknown

Not on your lists

comp(26179..26469)
DNA (291bp) protein (97aa)
PREDICTED: histone-lysine N-methyltransferase set1-like n=1 Tax=Pseudopodoces humilis RepID=UPI000395D720
SCNpilot_cont_300_bf_scaffold_613_curated_23
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26515..26844)
DNA (330bp) protein (110aa)
Ferredoxin n=2 Tax=Sphingomonas wittichii RepID=A5V2B0_SPHWW
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ABQ66426.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_300_bf_scaffold_613_curated_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26841..27911)
DNA (1071bp) protein (357aa)
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7]
aminotransferase n=1 Tax=Sphingomonas melonis RepID=UPI00037D1BF1
IscS protein {ECO:0000313|EMBL:GAN12535.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_300_bf_scaffold_613_curated_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27908..28972)
DNA (1065bp) protein (355aa)
cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037CF918
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29688.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_300_bf_scaffold_613_curated_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29079..29735
DNA (657bp) protein (219aa)
alpha/beta hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B37431
DNA, contig: SP611 {ECO:0000313|EMBL:GAN12537.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
alpha/beta hydrolase
SCNpilot_cont_300_bf_scaffold_613_curated_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29864..30055)
DNA (192bp) protein (64aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4BED8
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29674.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_613_curated_28
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30052..30999)
DNA (948bp) protein (316aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomona
acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
acetyl-CoA carboxylase subunit alpha n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B57CD4
SCNpilot_cont_300_bf_scaffold_613_curated_29
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31009..31905)
DNA (897bp) protein (299aa)
tyrosine recombinase XerD n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB152
Recombinase XerD {ECO:0000313|EMBL:KHA64757.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
phage integrase family protein
SCNpilot_cont_300_bf_scaffold_613_curated_30
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32044..33825)
DNA (1782bp) protein (594aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000364B0FE
Uncharacterized protein {ECO:0000313|EMBL:EZP56750.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
Displaying items 1-30 of 236 in total

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